SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5748

Length: 2121 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene5748
ACATGGGTCCGAAGACCTAGTGAAATCTCCCCCATCAGTCTTGTAACACAATGGAGATTTGAAGGCCAGACAAAATTTTGGTTTGAAAGGGTTTTAGATGACTATTAAAACCGTTCGTCCCTTAAACCCTGCAAGAAACTAGTTTCTAGTCTCATGGCGCAGCTGAGCACTTCGATTCGCCATATTTGCAGCAAATTCAGAGCTGCACAGAGCACAGGGGCAGTCCTCCCAGCATTTATCAGTGACAGGAGGGGAGCTTCAACCGCGACTGCATCTGCGGCCACGCCAGCGGAAGAAGAAGTAGTATATGAACGCAAGAAGCTAACTTTGTACAGACATTTATCCCGCCCCGGCAATTGGAATGAAAGTGCAGTTGAAGTAATCAAAGACTGGGCGCGTGAAGGTAAAAAGCTTACGAAAACGAATCTAGAAAAAGCCGTCGAGAAGCTCCGCAAATATGGCAGATATAAGCATGCCCTTGAGGTTTCAGAGTGGATGGATGGTAGTGGAGGGCTTCGGTTGGGTTTATCTGACTTGGCTATCCGCTTGGACTTGATAGCTAGAGTTCGTGGCATAGATGATGCTGAAAAGTATTTTATAAATCTCCCTGAGAGAGCAATGAACCATAAATCATATGGTGCACTTCTGAATTGTTATGTGAGAGAGGAATTGGTTGAAAAGGCAGAGGGAGTTATGGAAAAGATGAAAGCATTAGATTTTGTCTTGAATGCAGTTCCATACAACAACATGATGACTCTTTATTTTAAAATAGGTCAGCCAGAGAAAGTACCTCTTGTTATACAAGAAATGAAGGCCAATGATGTTGCGCCTGACACATTTACTTACAACATTTGGATGAAGAGCTGTGCTGCTATGTCAGGCATTGTTGCAGTGGAGAAAGTATTAGATGAAATGAAACGTGATGGTAGAGTTGGTGCTGACTGGACGACATACAGTAACTTGGCTGCCATTTATGTTGATAAAGGGATTGTTGCGAAAGCAGATTCTGCTTTGAAAGAAATGGAGAAAAGGATGCCTCAAAAAATGCTTTCTGCTTATACTTTTCTTATTACCATGTATGCTGGTATCCACAGTACAGCTGAGGTGCATAGGGTATGGGGAATGATAAGGCAAAGATTTTCTAATATGACCAACACAAGCTATATATGCATGCTTTCTTCATTGGTCAAACTTGGAGATATGCAGGGAGCCGAAAAATGTTTTGAAGAGTGGGAATCCGATGGCCTAAGTTATGATACCAGAGTGCCCAATGTACTAATTGATGCCTATATCACAAAAGGAATGATTGAAAAGGCAGAGTCTTTTCTTGAACACACTTTAGAAAAAGGTGGTAAACCAAATTTCAAAACATGGGAAATGTTTGTGGATGGATATCTAGAGAACAAGCAAATGAATCGAGCTATAGAGACCATGAAGAAAGCTATTTCAAAAGTTAAAAATCGTGAATGGCAGCCAGCTCCTGAAAAGGCACTAGCCATTCTTAAGCATTTTGAAGAGTTAGGTGATGTTGATGATGCAGAGGACATTTTCAAAAGGCTGAGAGGTGTTGATCATGTCAACACAGATACTTATAACTCATTATTACGTACATATATTCAAGCTGGAAAATCTCCTTCTAAAGTTCTTCGACGCATGAAACTGGATAAAATTGTTCCCGACATGGAAACTGATAGGTTACTCAGACAAATTGGTGAATTTGAATTGTGAAAGATTCCTTTAGCCCTAATGGTTTTGGGCCTTTACTGAAGGATGTATATTTTTCTTCAGCAATTACATCAGAGTGGTTTTTGCTTTTCCTGAAGGTTGCATGTTGAGCATTAATTTTTTGATGCAATAATCAAACACAGTTTTTAGCATGCTGCAGTAAATCGGTGATGAACAAGTGACAATTTATGTAGAATGGTGGCAATTTGTTGTGGTATTTGCCTATTTATGATGATTCTGTTGAAATCCCTTATTGTCTTCACCCTTACTGTCAAAAACGACAGCAGTCCCAATTTCTGCTGTGAACATTACATATAGTGCACCAGATTCTGAAAGATAATTAGTTGTGCCTTAGCGATGGTTTGGCATTTGTTCTTGATTTAGCTATACTCCATC

Ace file of the UniGene sp_v2.0_unigene5748 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SPI6_RICCO	-	-	44%
FL-Next	sp=Pentatricopeptide repeat-containing protein At1g60770; Arabidopsis thaliana (Mouse-ear cress).	-	-	41%
Blast2go	pentatricopeptide repeat-containing	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O22714

Fln msg: your sequence is longer than subject: 525 - 491

Fln protein: MAQLSTSIRHICSKFRAAQSTGAVLPAFISDRRGASTATASAATPAEEEVVYERKKLTLYRHLSRPGNWNESAVEVIKDWAREGKKLTKTNLEKAVEKLRKYGRYKHALEVSEWMDGSGGLRLGLSDLAIRLDLIARVRGIDDAEKYFINLPERAMNHKSYGALLNCYVREELVEKAEGVMEKMKALDFVLNAVPYNNMMTLYFKIGQPEKVPLVIQEMKANDVAPDTFTYNIWMKSCAAMSGIVAVEKVLDEMKRDGRVGADWTTYSNLAAIYVDKGIVAKADSALKEMEKRMPQKMLSAYTFLITMYAGIHSTAEVHRVWGMIRQRFSNMTNTSYICMLSSLVKLGDMQGAEKCFEEWESDGLSYDTRVPNVLIDAYITKGMIEKAESFLEHTLEKGGKPNFKTWEMFVDGYLENKQMNRAIETMKKAISKVKNREWQPAPEKALAILKHFEELGDVDDAEDIFKRLRGVDHVNTDTYNSLLRTYIQAGKSPSKVLRRMKLDKIVPDMETDRLLRQIGEFEL*

Protein Length: 526

Fln nts: ACATGGGTCCGAAGACCTAGTGAAATCTCCCCCATCAGTCTTGTAACACAATGGAGATTTGAAGGCCAGACAAAATTTTGGTTTGAAAGGGTTTTAGATGACTATTAAAACCGTTCGTCCCTTAAACCCTGCAAGAAACTAGTTTCTAGTCTC_-_ATGGCGCAGCTGAGCACTTCGATTCGCCATATTTGCAGCAAATTCAGAGCTGCACAGAGCACAGGGGCAGTCCTCCCAGCATTTATCAGTGACAGGAGGGGAGCTTCAACCGCGACTGCATCTGCGGCCACGCCAGCGGAAGAAGAAGTAGTATATGAACGCAAGAAGCTAACTTTGTACAGACATTTATCCCGCCCCGGCAATTGGAATGAAAGTGCAGTTGAAGTAATCAAAGACTGGGCGCGTGAAGGTAAAAAGCTTACGAAAACGAATCTAGAAAAAGCCGTCGAGAAGCTCCGCAAATATGGCAGATATAAGCATGCCCTTGAGGTTTCAGAGTGGATGGATGGTAGTGGAGGGCTTCGGTTGGGTTTATCTGACTTGGCTATCCGCTTGGACTTGATAGCTAGAGTTCGTGGCATAGATGATGCTGAAAAGTATTTTATAAATCTCCCTGAGAGAGCAATGAACCATAAATCATATGGTGCACTTCTGAATTGTTATGTGAGAGAGGAATTGGTTGAAAAGGCAGAGGGAGTTATGGAAAAGATGAAAGCATTAGATTTTGTCTTGAATGCAGTTCCATACAACAACATGATGACTCTTTATTTTAAAATAGGTCAGCCAGAGAAAGTACCTCTTGTTATACAAGAAATGAAGGCCAATGATGTTGCGCCTGACACATTTACTTACAACATTTGGATGAAGAGCTGTGCTGCTATGTCAGGCATTGTTGCAGTGGAGAAAGTATTAGATGAAATGAAACGTGATGGTAGAGTTGGTGCTGACTGGACGACATACAGTAACTTGGCTGCCATTTATGTTGATAAAGGGATTGTTGCGAAAGCAGATTCTGCTTTGAAAGAAATGGAGAAAAGGATGCCTCAAAAAATGCTTTCTGCTTATACTTTTCTTATTACCATGTATGCTGGTATCCACAGTACAGCTGAGGTGCATAGGGTATGGGGAATGATAAGGCAAAGATTTTCTAATATGACCAACACAAGCTATATATGCATGCTTTCTTCATTGGTCAAACTTGGAGATATGCAGGGAGCCGAAAAATGTTTTGAAGAGTGGGAATCCGATGGCCTAAGTTATGATACCAGAGTGCCCAATGTACTAATTGATGCCTATATCACAAAAGGAATGATTGAAAAGGCAGAGTCTTTTCTTGAACACACTTTAGAAAAAGGTGGTAAACCAAATTTCAAAACATGGGAAATGTTTGTGGATGGATATCTAGAGAACAAGCAAATGAATCGAGCTATAGAGACCATGAAGAAAGCTATTTCAAAAGTTAAAAATCGTGAATGGCAGCCAGCTCCTGAAAAGGCACTAGCCATTCTTAAGCATTTTGAAGAGTTAGGTGATGTTGATGATGCAGAGGACATTTTCAAAAGGCTGAGAGGTGTTGATCATGTCAACACAGATACTTATAACTCATTATTACGTACATATATTCAAGCTGGAAAATCTCCTTCTAAAGTTCTTCGACGCATGAAACTGGATAAAATTGTTCCCGACATGGAAACTGATAGGTTACTCAGACAAATTGGTGAATTTGAATTGTGA___AAGATTCCTTTAGCCCTAATGGTTTTGGGCCTTTACTGAAGGATGTATATTTTTCTTCAGCAATTACATCAGAGTGGTTTTTGCTTTTCCTGAAGGTTGCATGTTGAGCATTAATTTTTTGATGCAATAATCAAACACAGTTTTTAGCATGCTGCAGTAAATCGGTGATGAACAAGTGACAATTTATGTAGAATGGTGGCAATTTGTTGTGGTATTTGCCTATTTATGATGATTCTGTTGAAATCCCTTATTGTCTTCACCCTTACTGTCAAAAACGACAGCAGTCCCAATTTCTGCTGTGAACATTACATATAGTGCACCAGATTCTGAAAGATAATTAGTTGTGCCTTAGCGATGGTTTGGCATTTGTTCTTGATTTAGCTATACTCCATC

Fln Alignment:

Contig5748___LYRHLSRPGNWNESAVEVIKDWAREGKKLTKTNLEKAVEKLRKYGRYKHALEVSEWMXXXXXXXXXXXXLAIRLDLIARVRGIDDAEKYFINLPERAMNHKSYGALLNCYVREELVEKAEGVMEKMKALDFVLNAVPYNNMMTLYFKIGQPEKVPLVIQEMKANDVAPDTFTYNIWMKSCAAMSGIVAVEKVLDEMKRDGRVGADWTTYSNLAAIYVDKGIVAKADSALKEMEKRMPQKMLSAYTFLITMYAGIHSTAEVHRVWGMIRQRFSNMTNTSYICMLSSLVKLGDMQGAEKCFEEWESDGLSYDTRVPNVLIDAYITKGMIEKAESFLEHTLEKGGKPNFKTWEMFVDGYLENKQMNRAIETMKKAIS--KVKNREWQPAPEKALAILKHFEELGDVDDAEDIFKRLR-GVDHVNTDTYNSLLRTYIQAGKSPSKVLRRMKLDKIVPDMETDRLLRQIGE
O22714______________LYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVMEERGMNKTVSDQ-AIHLDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEATKKLLDEVSQ

SNPs (tot: 87)

Position	A %	C %	G %	T %	Probability
348	75			25	0.996473
349		75	25		0.996473
351			25	75	0.996473
352		75		25	0.996473
353		75	25		0.996473
354	25			75	0.996473
359		20		80	0.995493
360	80	20			0.995493
365		80		20	0.995493
369	80	20			0.995493
370	80		20		0.995493
373		80	20		0.995493
391		75	25		0.996473
392	20			80	0.995493
393			20	80	0.995493
394	20			80	0.995493
400			20	80	0.995493
404	80		20		0.995493
406		20		80	0.995493
407			20	80	0.995493
716	10	90			0.90298
717			10	90	0.90298
720	10			90	0.90298
721		10		90	0.90298
722	10	90			0.90298
723			10	90	0.90298
725		10		90	0.90298
729			10	90	0.90298
730	90		10		0.90298
737		90	10		0.90298
740	88		11		0.923564
829		33		66	1.0
911	16		83		0.994512
912		16	83		0.994512
913	16	83			0.994512
915		85		14	0.993533
967	16			83	0.994512
970			16	83	0.994512
971	16		83		0.994512
973		16		83	0.994512
976	16			83	0.994512
977	83		16		0.994512
979		16		83	0.994512
981	16		83		0.994512
983	83	16			0.994512
984	83		16		0.994512
1170			16	83	0.994512
1172		16		83	0.994512
1174	16			83	0.994512
1176	16		83		0.994512
1178	16	83			0.994512
1249	20			80	0.995493
1422	16			83	0.994512
1459		80	20		0.995493
1460	20			80	0.995493
1461		80	20		0.995493
1463		80	20		0.995493
1467			20	80	0.995493
1468	80	20			0.995493
1473			20	80	0.995493
1479	80	20			0.995493
1490		25		75	0.996473
1795	83		16		0.994512
1837	33		66		1.0
1854	33		66		1.0
1859	44		55		1.0
1897	11		88		0.923564
1905	11	88			0.923564
1906	11	88			0.923564
1925			77	22	0.999999
1926	77		22		0.999999
1928			25	75	1.0
1930			25	75	1.0
1931	25		75		1.0
1933	25			75	1.0
1936	75	25			1.0
1939			25	75	1.0
1940	75		25		1.0
1942		25	75		1.0
1943	25		75		1.0
1949	12	87			0.992554
1950			87	12	0.992554
1951	66			33	1.0
1952	83	16			0.994512
1954			16	83	0.994512
2065	66		33		0.997452
2071	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain