SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5741

Length: 2631 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene5741
CGTCGTGACCTTGGCTGTCACTCACTTTTGGCACAACTCTCTCCTGAAAATGCCTCCCTTTTGGACCCACAAGTGTTCAAGGAACCGCCAACCAACTTTCGCAGCATAAACATTTAGAGGCGTTGTCACAGATGCACGGAAATCCATCTTTAATTCGCGACACTGGTTACTGAAACAGGACGAAAAAGGATGCCTAAAAGGAAGAGGAATCACTATGCTGCAGAGTTTGGCGAGAAGATGGCCAGCACGGGAAGCCTTTCTGATGATACACTGCTCTCCATTTTTTCACACATTTCAACTCGAGATTTGCTTTCTCGGCTGGCTCTAGTCTGCAGGCGTTGGCGGCGCGTTACAAAGTCCTCTATGGTTAAAGAGCTGGTGCCTTCCATTCTATGCCGCTACGACCGGCCTTGGGGATCCGTGAATGAGAGAGATTTTGTAAGACTATGTTCTGGACATTCCAACTCTTTGGAGAAAGTTAGCTTGAATCGATTCAAGCTGGACACTGACCGGGTTATTTCACTAATAGTATCATTCCCAAATCTCAAGGATCTGTCAATTATTTCATGTGAATTTCTTACCTCAACTGACCTAGAAATTATTGCTAAAGTTCTTCCAGATCACCTTGTCAATCTCGATTTTCATGTGGACAGCCAATTTCACTCAAAAATTCCATCATTTTGTGATGGTATTGTTGATGCTGTGAGCCATAAATGCCCAAATCTTCAGAAGTTAGACCTTGATGGCTGTGTACAAATCTCAAAAGAATGTCTCTATAGATTTTTAGATTTGAAAATGTCCATCAAAATCCTTGATTTATATAGTGATGCCATTGGTTGGCCAGAACTTGGACATATCTTTGTGTCTCTTGAACAATTGCAGCACTTGTCTGTTGTGTCATCAAAGTTCAATGAAGCTCTAGACTCTAGTGAAGATGAGGATGATTTATCAGATGGAAGAAGGATGGGGTTTAGGAGGCGTTTAAAAAACAGGGATTATGCATCTCATCCTTCAGGTTCGGAGTCATATGGTGCTTTGGTTCCGTGTTGTTTATCCTCCTTGCGTCTTTACCATTCTCCACATCACTCTGTGTCTTTTAGTACAGCTCCATTCTCTGCACTAATAAAGGATATTGGCCATCAATTACATCATTTACATGCACAAAATGTGTTCCACACAAGCTGGCATACTATTTCAGTTTGGTGTGGTAATCTGGAAACGCTAGATTTGTCACACGAAAGGAACAAGGAACTTCTACTCACTGGGATTGAAGAAGTTATACTTTGTGGCATTCCACGCTTGTTGAAAAATCTCAAAAAGATTTCTCTTCCAACGGCGTTTGATAATGTTTTACTTGAGCTAGGTCGGTTTTGTCCTAAACTGAAGGAGCTGAGAGTTGAGGGTTTTAGTTGCACAGTTTCTAGAACAATGAAAGAGCAGGCAGTTACAGATAGAGGAGTGATAGCCATCGCTGGAGGTTGCCCAGAACTTGAGGTATTGAGCTTAAGTGGTTGTTGGAAGGTGACTGATTCAGCCATAAGGGCACTTGCATTTCAATGTAGACAACTGAAAATCTTGCATCTCACTAGTTGCAAGAATCTAACAGATATTGGCGTTACCCTACTTCTGCAACAACTGAACTGTTCACTGTGGCTACTTGATCTTGTGGGATGCGTAAAGATCACTAAAGGATTTATTGTTTCCTTTTCACATCTTACAAAGGATCAAGGATCTAGTCTTCGAGTTTTGGCAATCTCTGTGCGTCTTTGGAATTCCTCACAAAAAGAGCTCGCAAAATTGAAGATGTTTGCACCTTATTTGAATGTGAGAGTACATTCAAGTGTTATTCCATGGGATGGATTTTACCATTCACAGTCCTTGCAAGTTTAGCTCTGTATGTCTAAGTAATCCGAAGTCATGAAGCTGTTCAACATTATCAGACAGAAGGACAACATGATCAGAGGAGAGTTCATAGTATATAGAAGTCTTCTAGAGTATTTCTTCAATATGATTTGTTAGTTTCCATTTCAGAACCAGTTCCCTTTGGTGATATAATTCTTGTTTAGAATAGTGTTTTCAAGAAGATTTGTTATTGCAATATGGTTACATGATGTTCTTGGTATTTAGTTCAGCTCATGGGACAATCCTAATGTCTTTAATCAGGATTGAAAATCCATCTATTTGAAATTGAAGATGTTTGCACCTTATTTGAGTGTGACAGTAGGTTCATGCATTATTCCATGGGACAGATTTTACTATTCATAGTCCTTGCAAATTTGGTTATAATTTGGTTATATTTCCAAGTATTGTCCAAGTAACAGATATAGTTCCTTGTTTACAGTAGTGTTTTCCGGAGTCTTTGCTACTGCACTGTGGTTACATGATGTTCTTGATATTTAGTTCATCACATGTGACAAGGCAAGGTTGACAATCCATCTATTTGTTTCTATTGTAAGGAATTAAATGCTCACAGGTCTGAATTTGCAATCACTAAAGTTGGAAATATATTGTGTAGTGGAAGCACGCAAAAGCAGACTTATGGATCGATTGCAAGGAAACCTATTTAATGACAAGTTATTTCATGTCATTAGGTTAATTTCAACAACTTGAAATGTGCCTTTCTTAATGTAA

Ace file of the UniGene sp_v2.0_unigene5741 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to F-box and leucine-rich repeat protein 2 [Canis familiaris]	-	-	6.0e-11	31%
FL-Next	sp=F-box protein SKP2B; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	34%
Blast2go	f-box lrr-repeat protein 2-like	-	-	0.0	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O49286

Fln msg: your sequence is longer than subject: 567 - 360

Fln protein: MPKRKRNHYAAEFGEKMASTGSLSDDTLLSIFSHISTRDLLSRLALVCRRWRRVTKSSMVKELVPSILCRYDRPWGSVNERDFVRLCSGHSNSLEKVSLNRFKLDTDRVISLIVSFPNLKDLSIISCEFLTSTDLEIIAKVLPDHLVNLDFHVDSQFHSKIPSFCDGIVDAVSHKCPNLQKLDLDGCVQISKECLYRFLDLKMSIKILDLYSDAIGWPELGHIFVSLEQLQHLSVVSSKFNEALDSSEDEDDLSDGRRMGFRRRLKNRDYASHPSGSESYGALVPCCLSSLRLYHSPHHSVSFSTAPFSALIKDIGHQLHHLHAQNVFHTSWHTISVWCGNLETLDLSHERNKELLLTGIEEVILCGIPRLLKNLKKISLPTAFDNVLLELGRFCPKLKELRVEGFSCTVSRTMKEQAVTDRGVIAIAGGCPELEVLSLSGCWKVTDSAIRALAFQCRQLKILHLTSCKNLTDIGVTLLLQQLNCSLWLLDLVGCVKITKGFIVSFSHLTKDQGSSLRVLAISVRLWNSSQKELAKLKMFAPYLNVRVHSSVIPWDGFYHSQSLQV*

Protein Length: 568

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTTTGGCACAACTCTCTCCTGAAAATGCCTCCCTTTTGGACCCACAAGTGTTCAAGGAACCGCCAACCAACTTTCGCAGCATAAACATTTAGAGGCGTTGTCACAGATGCACGGAAATCCATCTTTAATTCGCGACACTGGTTACTGAAACAGGACGAAAAAGG_-_ATGCCTAAAAGGAAGAGGAATCACTATGCTGCAGAGTTTGGCGAGAAGATGGCCAGCACGGGAAGCCTTTCTGATGATACACTGCTCTCCATTTTTTCACACATTTCAACTCGAGATTTGCTTTCTCGGCTGGCTCTAGTCTGCAGGCGTTGGCGGCGCGTTACAAAGTCCTCTATGGTTAAAGAGCTGGTGCCTTCCATTCTATGCCGCTACGACCGGCCTTGGGGATCCGTGAATGAGAGAGATTTTGTAAGACTATGTTCTGGACATTCCAACTCTTTGGAGAAAGTTAGCTTGAATCGATTCAAGCTGGACACTGACCGGGTTATTTCACTAATAGTATCATTCCCAAATCTCAAGGATCTGTCAATTATTTCATGTGAATTTCTTACCTCAACTGACCTAGAAATTATTGCTAAAGTTCTTCCAGATCACCTTGTCAATCTCGATTTTCATGTGGACAGCCAATTTCACTCAAAAATTCCATCATTTTGTGATGGTATTGTTGATGCTGTGAGCCATAAATGCCCAAATCTTCAGAAGTTAGACCTTGATGGCTGTGTACAAATCTCAAAAGAATGTCTCTATAGATTTTTAGATTTGAAAATGTCCATCAAAATCCTTGATTTATATAGTGATGCCATTGGTTGGCCAGAACTTGGACATATCTTTGTGTCTCTTGAACAATTGCAGCACTTGTCTGTTGTGTCATCAAAGTTCAATGAAGCTCTAGACTCTAGTGAAGATGAGGATGATTTATCAGATGGAAGAAGGATGGGGTTTAGGAGGCGTTTAAAAAACAGGGATTATGCATCTCATCCTTCAGGTTCGGAGTCATATGGTGCTTTGGTTCCGTGTTGTTTATCCTCCTTGCGTCTTTACCATTCTCCACATCACTCTGTGTCTTTTAGTACAGCTCCATTCTCTGCACTAATAAAGGATATTGGCCATCAATTACATCATTTACATGCACAAAATGTGTTCCACACAAGCTGGCATACTATTTCAGTTTGGTGTGGTAATCTGGAAACGCTAGATTTGTCACACGAAAGGAACAAGGAACTTCTACTCACTGGGATTGAAGAAGTTATACTTTGTGGCATTCCACGCTTGTTGAAAAATCTCAAAAAGATTTCTCTTCCAACGGCGTTTGATAATGTTTTACTTGAGCTAGGTCGGTTTTGTCCTAAACTGAAGGAGCTGAGAGTTGAGGGTTTTAGTTGCACAGTTTCTAGAACAATGAAAGAGCAGGCAGTTACAGATAGAGGAGTGATAGCCATCGCTGGAGGTTGCCCAGAACTTGAGGTATTGAGCTTAAGTGGTTGTTGGAAGGTGACTGATTCAGCCATAAGGGCACTTGCATTTCAATGTAGACAACTGAAAATCTTGCATCTCACTAGTTGCAAGAATCTAACAGATATTGGCGTTACCCTACTTCTGCAACAACTGAACTGTTCACTGTGGCTACTTGATCTTGTGGGATGCGTAAAGATCACTAAAGGATTTATTGTTTCCTTTTCACATCTTACAAAGGATCAAGGATCTAGTCTTCGAGTTTTGGCAATCTCTGTGCGTCTTTGGAATTCCTCACAAAAAGAGCTCGCAAAATTGAAGATGTTTGCACCTTATTTGAATGTGAGAGTACATTCAAGTGTTATTCCATGGGATGGATTTTACCATTCACAGTCCTTGCAAGTTTAG___CTCTGTATGTCTAAGTAATCCGAAGTCATGAAGCTGTTCAACATTATCAGACAGAAGGACAACATGATCAGAGGAGAGTTCATAGTATATAGAAGTCTTCTAGAGTATTTCTTCAATATGATTTGTTAGTTTCCATTTCAGAACCAGTTCCCTTTGGTGATATAATTCTTGTTTAGAATAGTGTTTTCAAGAAGATTTGTTATTGCAATATGGTTACATGATGTTCTTGGTATTTAGTTCAGCTCATGGGACAATCCTAATGTCTTTAATCAGGATTGAAAATCCATCTATTTGAAATTGAAGATGTTTGCACCTTATTTGAGTGTGACAGTAGGTTCATGCATTATTCCATGGGACAGATTTTACTATTCATAGTCCTTGCAAATTTGGTTATAATTTGGTTATATTTCCAAGTATTGTCCAAGTAACAGATATAGTTCCTTGTTTACAGTAGTGTTTTCCGGAGTCTTTGCTACTGCACTGTGGTTACATGATGTTCTTGATATTTAGTTCATCACATGTGACAAGGCAAGGTTGACAATCCATCTATTTGTTTCTATTGTAAGGAATTAAATGCTCACAGGTCTGAATTTGCAATCACTAAAGTTGGAAATATATTGTGTAGTGGAAGCACGCAAAAGCAGACTTATGGATCGATTGCAAGGAAACCTATTTAATGACAAGTTATTTCATGTCATTAGGTTAATTTCAACAACTTGAAATGTGCCTTTCTTAATGTAA

Fln Alignment:

Contig5741___CGNLETLDLSHERNKELLLTGIEEVILCGIPRLLKNLKKISLP--TAF-DNVLLELGRFCPKLKELR----VEGFSCTVSRTMKEQA-------------VTDRGVIAIAGGCPELEVLSLSGCWKVTDSAIRALAFQCRQLKILHLTSCKNLTD
O49286______________CHELQDLDLSKSSK-------ITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCRNITD

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
348			33	66	1.0
361	66		33		1.0
362			33	66	1.0
364		33		66	1.0
365	33		66		1.0
367	66		33		1.0
369		33	66		1.0
407	83	16			0.994512
408		16		83	0.994512
409		16	83		0.994512
411	83			16	0.994512
492	85	14			0.993533
503	88		11		0.923564
562	88			11	0.923564
563	88		11		0.923564
564		88		11	0.923564
672			20	80	0.999996
673	20	80			0.999996
674		80	20		0.999996
676		80	20		0.999996
677	20			80	0.999996
678		20	80		0.999996
680		20		80	0.999996
683	20			80	0.999996
691			20	80	0.999996
692	20			80	0.999996
943	83		16		0.999991
945	83		16		0.999991
947	16	83			0.999991
949	16	8		75	0.99999
950	8		16	75	0.99999
951		16		83	0.999991
952	81	18			0.999994
953	18		81		0.999994
954	18			81	0.999994
956	81		18		0.999994
959	18			81	0.999994
960		18		81	0.999994
961			18	81	0.999994
1406	14		85		0.993533
1671		83		16	0.994512
1691	80	20			0.995493
1692	80	20			0.995493
1843		20		80	0.995493
2493			69	30	1.0
2496			30	69	1.0
2498			33	66	1.0
2499	33	66			1.0
2501	33	8	58		1.0
2502	8		33	58	1.0
2503		33	58	8	1.0
2506	36			63	1.0
2507		63	36		1.0
2511		36	63		1.0
2513		36	9		1.0
2529			14	85	0.993533
2530	14			85	0.993533
2531	85		14		0.993533
2535	16			83	0.994512
2538		16	83		0.994512
2541	83		16		0.994512
2544		16		83	0.994512
2545	16		83		0.994512
2547	16			83	0.994512
2548		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain