SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5706

Length: 428 nt

Origin of reads: Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene5706
AATGTAATCTCTTGATTAAAAAGGCCTACATATCTTCTGATGGAGGATGGTTCATGGACGTATTTCATGTGACAGATCAATATGGCAAGAAGCTAACAGACGAAGGTGTAATTGGGTGTATTCAGAAGTCACTGGGAACGAATGCCTGTTTCTTACCTTGTCTGAGGAGATCTGTGGGATTGAAGCCTGCATCAGAGCACACGGTGATTGAGTTAACAGGAACGGATAGGCCAGGCCTGCTCTCTGAAGTATTTGCTGTACTTGTAGATCTCAAGTGTAATGTTGTAGGAGCTGAGGTATGGACCCATAACATGAGGGTTGCCTCTGTGGTGTATGTTACTGATGAGGCCACAGGTGCTCCTATTGATGATCCGGAAAGGCTTTCGAGGATCAGTAGAGTTGTTATGCAATGTTTTGAGAGGCAATAA

Ace file of the UniGene sp_v2.0_unigene5706 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RMA6_RICCO	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	80%
Blast2go	amino acid binding	GO:0016597	Molecular Function	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	MATH	IPR002083	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Protein-PII uridylyltransferase	IPR010043	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADB5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 257 aas, your sequence is shorter than subject: 142 - 439

Fln protein: CNLLIKKAYISSDGGWFMDVFHVTDQYGKKLTDEGVIGCIQKSLGTNACFLPCLRRSVGLKPASEHTVIELTGTDRPGLLSEVFAVLVDLKCNVVGAEVWTHNMRVASVVYVTDEATGAPIDDPERLSRISRVVMQCFERQ*

Protein Length: 143

Fln nts: AATGTAATCTCTTGATTAAAAAGGCCTACATATCTTCTGATGGAGGATGGTTCATGGACGTATTTCATGTGACAGATCAATATGGCAAGAAGCTAACAGACGAAGGTGTAATTGGGTGTATTCAGAAGTCACTGGGAACGAATGCCTGTTTCTTACCTTGTCTGAGGAGATCTGTGGGATTGAAGCCTGCATCAGAGCACACGGTGATTGAGTTAACAGGAACGGATAGGCCAGGCCTGCTCTCTGAAGTATTTGCTGTACTTGTAGATCTCAAGTGTAATGTTGTAGGAGCTGAGGTATGGACCCATAACATGAGGGTTGCCTCTGTGGTGTATGTTACTGATGAGGCCACAGGTGCTCCTATTGATGATCCGGAAAGGCTTTCGAGGATCAGTAGAGTTGTTATGCAATGTTTTGAGAGGCAATAA

Fln Alignment:

Contig5706___LLIKKAYISSDGGWFMDVFHVTDQYGKKLTDEGVIGCIQKSLGTNACFLPCLRRSVGLKPASE-HTVIELTGTDRPGLLSEVFAVLVDLKCNVVGAEVWTHNMRVASVVYVTDEATGAPIDDPERLSRISRVV
D5ADB5______________LNINKANVSSDGRWFMDVFYVTDENGKKLTDEGVIGYIEKTLETNPCILPSFGKSVGVEVAADQHTAIELTGTDRPGLLSEIFAVLSDLKCNVVEAEVWTHNRRVACLVYVTDEETGAPIDDGQKICKIEELL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
353		16		83	0.994512
354	16	83			0.994512
356			83	16	0.994512
410	20			80	0.995493
411		20		80	0.995493
413	80			20	0.995493
417	66			33	0.997452
418			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain