SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5705

Length: 276 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene5705
GTACAAAATACAGAGCTTCAACTTGGCTTCAAGCGACCAGCTGTGATCATGATTGTTGGTGTCAATGGAGGAGGAAAGACGACATCTATAGGAAAGCTTGCTTACAGACTTAAAAATGAGGGAATAAAGGTCCTAATGGCAGCAGGCGATACATTTCGAGCAGCAGCCAGCGATCAACTAGATGTATGGGCAAAAAGGACCAATTCAGAGATTGTCATAGGTGAAGGAGAAAATGTTAAGCCAACCTCAGTTTTGTCTCAGGCTGTACGCAGAGCA

Ace file of the UniGene sp_v2.0_unigene5705

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os01g0958100 protein (Fragment) n=1 Tax=Oryza sativa Japonica Group RepID=Q0JFW3_ORYSJ	-	-	3.0e-33	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	fused signal recognition particle receptor	-	-	2.54994e-41	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	2.54994e-41	88%

Source	KEGGs	Term	e value	Identity
Blast2go	Purine metabolism	00230	2.54994e-41	88%
Blast2go	Thiamine metabolism	00730	2.54994e-41	88%
Blast2go	Metabolic pathways	01100	2.54994e-41	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	2.54994e-41	88%
Blast2go	protein import into chloroplast thylakoid membrane	GO:0045038	Biological Process	2.54994e-41	88%
Blast2go	photosynthetic electron transport in photosystem II	GO:0009772	Biological Process	2.54994e-41	88%
Blast2go	cell division	GO:0051301	Biological Process	2.54994e-41	88%
Blast2go	thylakoid membrane organization	GO:0010027	Biological Process	2.54994e-41	88%
Blast2go	SRP-dependent cotranslational protein targeting to membrane	GO:0006614	Biological Process	2.54994e-41	88%
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	2.54994e-41	88%
Blast2go	receptor activity	GO:0004872	Molecular Function	2.54994e-41	88%
Blast2go	DNA binding	GO:0003677	Molecular Function	2.54994e-41	88%
Blast2go	protein binding	GO:0005515	Molecular Function	2.54994e-41	88%
Blast2go	GTP binding	GO:0005525	Molecular Function	2.54994e-41	88%
Blast2go	signal recognition particle, endoplasmic reticulum targeting	GO:0005786	Cellular Component	2.54994e-41	88%
Blast2go	chloroplast thylakoid	GO:0009534	Cellular Component	2.54994e-41	88%

Source	InterPros	Term	Type	Identity
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Cell division transporter substrate-binding protein FtsY	IPR004390	-	-
Sma3	Signal recognition particle, SRP54 subunit, helical bundle	IPR013822	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD34

Fln msg: Distance to subject end: 123 aas, your sequence is shorter than subject: 76 - 199

Fln protein: MIVGVNGGGKTTSIGKLAYRLKNEGIKVLMAAGDTFRAAASDQLDVWAKRTNSEIVIGEGENVKPTSVLSQAVRRA

Protein Length: 77

Fln nts: GTACAAAATACAGAGCTTCAACTTGGCTTCAAGCGACCAGCTGTGATC_-_ATGATTGTTGGTGTCAATGGAGGAGGAAAGACGACATCTATAGGAAAGCTTGCTTACAGACTTAAAAATGAGGGAATAAAGGTCCTAATGGCAGCAGGCGATACATTTCGAGCAGCAGCCAGCGATCAACTAGATGTATGGGCAAAAAGGACCAATTCAGAGATTGTCATAGGTGAAGGAGAAAATGTTAAGCCAACCTCAGTTTTGTCTCAGGCTGTACGCAGAGCA

Fln Alignment:

Contig5705___MIVGVNGGGKTTSIGKLAYRLKNEGIKVLMAAGDTFRAAASDQLDVWAKRTNSEIVIGEGENVKPTSVLSQAVRRA
D5AD34______________MIVGVNGGGKTTSIGKLAYRLKNEGIKVLMAAGDTFRAAASDQLEVWAKRTKSEIVIGEGEKVKPASVLSQAVRRA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
83	11	88			0.923564
86		88	11		0.923564
154	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain