SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5641

Length: 963 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5641

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PTEN_C2 multi-domain protein	-	-	6.0e-37	36%
FL-Next	sp=Formin-like protein 3; Oryza sativa subsp. japonica (Rice).	-	-	0.0	61%
Blast2go	dna binding	-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	microsporogenesis	GO:0009556	Biological Process	80%
Blast2go	actin cytoskeleton organization	GO:0030036	Biological Process	80%
Blast2go	microtubule binding	GO:0008017	Molecular Function	80%
Blast2go	actin filament binding	GO:0051015	Molecular Function	80%
Blast2go	DNA binding	GO:0003677	Molecular Function	80%
Blast2go	catalytic activity	GO:0003824	Molecular Function	80%
Blast2go	preprophase band	GO:0009574	Cellular Component	80%
Blast2go	spindle	GO:0005819	Cellular Component	80%
Blast2go	phragmoplast	GO:0009524	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Actin-binding FH2/DRF autoregulatory	IPR003104	-	-
Sma3	Outer membrane autotransporter barrel	IPR006315	-	-
Sma3	Tensin phosphatase, C2 domain	IPR014020	-	-
Sma3	Actin-binding FH2	IPR015425	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7G6K7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 700 aas, your sequence is shorter than subject: 320 - 1234

Fln protein: S*PWLSLILRAVPNFDSQNGCRPIIRVFGRDIHNKGGLSTQMLFSMTKKKKTLRHYRQVDCDVVKIDIQCMVQGDVVLECIHLETDPEREVMMFRVMFNTAFIRSNILMLNVDDLDILWDSKERFSKNFRAEVLFGEVEALSPSRPPIATLNGEEKGGLPVEAFARVQEYFSGVEWIDSGGDAALLFFKQISSDDFQERFEKLFSNGMNDRPALRSKQNIHSTPIVFEEEEKEVKQEDSLPTSLHSKSKSDPNLSAQVAPYTAHGSTAPPGTTPPPLSRAMSSSLPPASLPQRSGPPPPPPPPPLPCLSKPNASSPLPPL

Protein Length: 321

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTCGTGCTGTACCTAACTTTGATTCTCAGAATGGTTGTCGTCCAATTATTCGTGTGTTTGGGCGGGATATTCATAATAAGGGCGGGCTTTCCACACAGATGCTTTTCTCCATGACTAAGAAGAAGAAAACCTTGCGACACTACAGACAGGTTGATTGTGATGTTGTGAAAATTGACATCCAATGCATGGTACAAGGGGATGTTGTTTTGGAATGCATTCATTTAGAGACAGATCCAGAGAGAGAGGTTATGATGTTCAGAGTTATGTTCAATACTGCTTTTATTCGGTCCAACATTCTGATGCTAAACGTAGATGATCTTGACATACTCTGGGATTCTAAGGAACGGTTTTCAAAAAATTTCCGAGCTGAAGTCCTCTTTGGAGAAGTAGAAGCCCTTTCTCCTTCAAGACCACCTATCGCAACACTGAATGGAGAAGAAAAGGGTGGGTTGCCTGTGGAAGCTTTTGCAAGGGTCCAGGAATATTTCAGTGGTGTTGAGTGGATTGATAGTGGAGGTGATGCTGCACTATTGTTCTTTAAACAGATTTCGTCCGATGACTTTCAAGAAAGATTTGAGAAACTCTTTTCCAATGGTATGAACGATCGCCCAGCTTTGCGTAGCAAGCAGAATATACATTCAACACCTATTGTATTTGAAGAAGAGGAGAAAGAGGTTAAGCAGGAAGATTCTCTGCCAACTTCATTGCATTCTAAATCAAAATCTGATCCCAATTTGTCAGCTCAAGTTGCACCATATACTGCTCATGGATCAACAGCACCTCCAGGAACAACTCCTCCACCACTGTCAAGGGCAATGTCATCCTCCCTTCCTCCAGCATCTCTTCCACAAAGATCAGGCCCACCTCCACCTCCACCCCCTCCACCTTTGCCATGTTTGTCTAAGCCCAATGCATCTTCACCTCTGCCTCCACTTC

Fln Alignment:

Contig5641___LILRAVPNFDSQNGCRPIIRVFGRDIHNKGGLSTQMLFSMTKKKKTLRHYRQVDCDVVKIDIQCMVQGDVVLECIHLETDPEREVMMFRVMFNTAFIRSNILMLNVDDLDILWDSKERFSKNFRAEVLFGEVEALSPSRPPIATLNGEEKGGLPVEAFARVQEYFSGVEWIDSGGDAALLFFKQISSDDFQERFEKLFSNGMNDRPALRSK
Q7G6K7______________LILRAIPSFDSDNGCRPLVRIFGRNIIGKNASTSNMIFSMPKKK-TLRHYRQEDCDVIKIDIQCPVQGDVVLECVHLDLDPEKEVMMFRIMFNTAFIRSNVLMLNSDDIDIVWGSKDQYPRNFRAEMLFCELGGISPARPPTATLNGDMKGGLPIEAFSAVQELFNGVDWMESSDNAAFWLLKEFSANSLQEKFQKLILSDMEELSKFQAK

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
444		20		80	0.995493
445	80		20		0.995493
449		80		20	0.995493
450	80		20		0.995493
453	80	20			0.995493
454		80		20	0.995493
457	80		20		0.995493
458	80	20			0.995493
462	80			20	0.995493
463		20	80		0.995493
467	80	20			0.995493
468	80			20	0.995493
469	80	20			0.995493
614			28	71	1.0
616			28	71	1.0
617	28			71	1.0
621	71			28	1.0
627	71		28		1.0
629		28	71		1.0
632	71			28	1.0
634	28		71		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain