SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5637

Length: 1472 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene5637 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA helicase recq1, putative n=1 Tax=Ricinus communis RepID=B9S1J8_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	atp-dependent dna helicase q-like 2	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	DNA recombination	GO:0006310	Biological Process	71%
Blast2go	DNA repair	GO:0006281	Biological Process	71%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	71%
Blast2go	3'-5' DNA helicase activity	GO:0043138	Molecular Function	71%
Blast2go	protein binding	GO:0005515	Molecular Function	71%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	71%
Blast2go	four-way junction helicase activity	GO:0009378	Molecular Function	71%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase/RNase D C-terminal, HRDC domain	IPR002121	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	DNA helicase, ATP-dependent, RecQ type	IPR004589	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3		IPR018329	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKZ7

Fln msg: your sequence is shorter than subject: 465 - 504

Fln protein: MGAMAVIDDIANFIRGSYQNKESGIVYCFTRKECEQVAKELRQRGISAEHYHADMDVKARESVHLRWSTNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSLETYYQESGRAGRDGLPSHCLLYFRPADLPRQSSMVFYEHAGLENLYAIARFCQSKSRCRRVAFFGHFGESLQECNGMCDNCSFPKEIKHIDVTPHARSLVSLVNEIQNNDQRATLLQLVDNWKTKCRQAGTNASTKDLAKDMKKEDVEQLIVQLILNGMLEEEFQHTAYATNAYIVRGPLSKGLLQGQRVVKLEMIQGPKVDSQTAKKGAFLDNKNMHSGLALILDELRKELSQKHGGIFPHAVLSSQHITMLCTQQPTSMEEVEKVLGKRKAEQYGKEILDCIQRYISQGPQSTSGQWVSPKKQKQTGNEKNRNNAGDGKRGKAKRAFVCVSSSDNESEDLYETKDDDDFEISTIKRSKKA*

Protein Length: 466

Fln nts: ATGGGTGCCATGGCAGTCATCGATGATATAGCAAATTTTATACGTGGATCTTACCAAAACAAGGAGTCTGGAATTGTCTACTGCTTTACACGAAAAGAATGTGAACAGGTTGCTAAGGAATTGCGGCAGCGTGGTATATCGGCAGAACATTATCATGCAGATATGGATGTTAAGGCTCGTGAAAGTGTTCATCTTCGTTGGAGTACAAACAAGTTACAAGTTATAGTAGGCACGGTTGCATTTGGCATGGGTATTAACAAGCCAGATGTTAGATTTGTCATTCACCACAGTCTTAGCAAATCATTGGAAACATATTATCAGGAAAGTGGCCGAGCAGGTCGTGATGGCCTTCCATCACATTGTTTACTATACTTCAGGCCAGCTGATCTTCCTCGACAGAGTTCGATGGTCTTCTATGAGCATGCTGGCTTGGAAAATCTTTATGCCATTGCTCGTTTTTGTCAGTCAAAGAGTAGGTGCCGCCGCGTAGCATTTTTTGGTCACTTTGGGGAGTCATTACAGGAATGCAATGGAATGTGTGATAACTGTTCTTTTCCGAAGGAGATAAAGCATATTGATGTCACTCCTCATGCAAGGTCTCTGGTATCCTTGGTGAATGAAATTCAAAATAATGACCAACGGGCTACTTTGCTGCAATTGGTTGATAACTGGAAGACAAAGTGCCGACAAGCAGGGACAAATGCATCTACAAAAGATCTCGCCAAAGATATGAAGAAAGAGGATGTAGAGCAATTGATTGTCCAGCTTATATTAAATGGAATGTTGGAAGAAGAGTTCCAACATACAGCATATGCCACAAATGCATACATTGTACGTGGACCATTATCAAAGGGGTTGCTACAAGGACAAAGGGTGGTGAAGTTGGAGATGATTCAAGGACCGAAGGTTGACAGTCAAACTGCTAAGAAGGGAGCATTTCTTGATAATAAGAATATGCATTCTGGTTTGGCACTTATTCTTGATGAGCTCCGCAAGGAACTTTCTCAAAAGCATGGGGGCATATTCCCTCATGCTGTGTTGTCCTCGCAACATATTACTATGTTATGTACTCAACAACCAACCTCAATGGAAGAGGTGGAGAAAGTGCTAGGGAAAAGAAAAGCGGAGCAGTATGGAAAGGAAATCCTTGATTGTATTCAACGGTATATATCCCAGGGCCCTCAAAGCACATCAGGACAATGGGTTTCACCAAAAAAACAAAAACAGACTGGGAATGAGAAGAATCGTAACAATGCTGGAGATGGGAAAAGAGGGAAAGCCAAGAGAGCTTTTGTGTGTGTATCTAGTAGTGATAATGAGTCAGAAGACCTATATGAAACCAAAGATGACGACGACTTTGAAATCTCCACCATTAAAAGATCAAAAAAGGCATAA___GCAGTCCATAATCCTTGAAGGGGGATCATGACCTGACATTGGCTTTGACATAAACATAAGCTCCCAATGGCTGCTTA

Fln Alignment:

Contig5637___IVYCFTRKECEQVAKELRQRGISAEHYHADMDVKARESVHLRWSTNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSLETYYQESGRAGRDGLPSHCLLYFRPAD
B8LKZ7______________LIFLETKKGCDQVTRKLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDIKCVINYDFPGSMEDYVHRIGRTGRAGAKGTAYTYFTAAN

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
205	20			80	0.995493
206			20	80	0.995493
208		80	20		0.995493
209	20	80			0.995493
212			20	80	0.995493
216	20	80			0.995493
220	80		20		0.995493
222		20		80	0.995493
223	20		80		0.995493
224		20		80	0.995493
225			20	80	0.995493
1084			75	25	0.996473
1152	20	80			0.995493
1154			20	80	0.995493
1189		10		90	0.90298
1190	10		90		0.90298
1191	10			90	0.90298
1196	90	10			0.90298
1198		10		90	0.90298
1255		14		85	0.993533
1262		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain