SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5622

Length: 567 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5622

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chromo domain containing protein	-	-	8.0e-05	52%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	58%
Blast2go	hypothetical protein VITISV_014148 [Vitis vinifera]	-	-	3.14713e-23	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA metabolic process	GO:0006259	Biological Process	3.14713e-23	66%
Blast2go	transferase activity, transferring phosphorus-containing groups	GO:0016772	Molecular Function	3.14713e-23	66%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	3.14713e-23	66%
Blast2go	mitochondrion	GO:0005739	Cellular Component	3.14713e-23	66%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
167	16	83			0.994512
168	83			16	0.994512
173		66		33	1.0
191		33		66	1.0
198		16		83	0.994512
213	57		42		1.0
216	14		85		0.993533
217		85		14	0.993533
219	28	14	42		1.0
220		71	14	14	0.984337
222	57		42		1.0
227		85		14	0.993533
231		42		57	1.0
233		14		85	0.993533
237		14		85	0.993533
240		71		28	1.0
242	14		85		0.993533
251	57		42		1.0
252	28		71		1.0
254	14	14		71	0.984337
255	28		71		1.0
256		57		42	1.0
257	28		71		1.0
261		57		42	1.0
263	14		85		0.993533
266	14	85			0.993533
267	42		57		1.0
269		14		85	0.993533
270		85		14	0.993533
271		57		42	1.0
273	42		57		1.0
274	14		85		0.993533
278		14		85	0.993533
280			14	85	0.993533
293	85	14			0.993533
294	14		85		0.993533
300	28		71		1.0
319		16		83	0.994512
332	83		16		0.994512
333			83	16	0.994512
339	37		62		1.0
340		87		12	0.992554
342	50		50		1.0
350		88		11	0.923564
351	88	11			0.923564
364	12		87		0.992554
372		14	85		0.993533
382	16		83		0.994512
385	33		66		1.0
386	50		50		1.0
389			83	16	0.994512
390	83	16			0.994512
397	83		16		0.994512
403		83		16	0.994512
405	16			83	0.994512
413		80		20	0.995493
414	80	20			0.995493
415		20		80	0.995493
416	20		80		0.995493
418		80		20	0.995493
427	80	20			0.995493
432		50		50	1.0
434	75		25		0.996473
440		75		25	0.996473
441		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain