SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5608

Length: 1116 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5608

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter, subfamily G, member 4, group WBC protein PpABCG4 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SCA8_PHYPA	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	abc transporter g family member 22-like	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	73%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNF9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 222 - 819

Fln protein: S*PWLSLIFMAMFWGYFPLFTAIFAFPQEKAILAKERRSDMYCLSAYFLALTLGDLPLDLILNAVFMVIVYLMAHLRMSVGIFLLTILASFLDVVTSQGLGLAIGAATMDLKKGTTLASVVVLAFMISGGYFVQHIPVFMSWIRYCSFQYYTFKLLMKVQYSDDQPYDCVGPGRCRSLASSPAIRGTNLGGGGSEVLALLIMIVGYRIIAYIALRRMKLAV*

Protein Length: 223

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTCATGGCCATGTTTTGGGGGTATTTTCCTCTTTTCACAGCAATCTTCGCATTTCCTCAGGAGAAGGCCATTCTGGCAAAAGAACGTAGATCTGATATGTACTGTTTGAGTGCTTACTTCTTGGCTCTCACGTTGGGTGATCTCCCTCTTGACCTCATCCTGAACGCCGTTTTCATGGTGATTGTCTACCTGATGGCTCATCTGCGGATGTCAGTGGGCATATTCTTGTTAACAATACTTGCCAGCTTCTTAGACGTGGTCACTTCGCAGGGCCTTGGCCTAGCAATTGGAGCAGCCACGATGGATTTGAAGAAAGGAACCACGCTAGCTTCTGTTGTAGTTCTGGCTTTCATGATCAGTGGTGGCTATTTTGTGCAGCACATCCCGGTTTTCATGAGCTGGATCAGATATTGCTCGTTTCAGTATTATACATTCAAATTGCTCATGAAAGTTCAATACAGCGACGACCAGCCCTATGACTGCGTCGGCCCCGGTAGGTGCAGATCCCTGGCGTCCTCCCCGGCTATTCGTGGCACAAATCTCGGAGGAGGTGGTTCGGAGGTATTGGCATTGCTGATAATGATAGTGGGCTATAGAATTATCGCCTACATTGCCCTTCGGAGAATGAAATTAGCAGTCTGA___TGAAGCTAAAAACATTGTGGACAGTTGAAAGTACACAAGATTTGCTCGTAGGTTTATTCCTATTTTGGATGATATGGAACTGATATGAAATTCTAGGTCGCCAGGGCGTGGTTGAACTGTTAAGTGAGTAGATTTAGTTGTCCAATCCATAAGAATATACACACCTAAGCTCCAAACATGATCACTCATCTCACCATTTCATCAAAAACCTGGTAATTTCCATGAAGATCAAAGATTCCAGGGAAAATATGCTGGTTTACTAATGGAGATTGACAAGTTTGCACAAACATTAAGTTCTGCCGTATGTATTGTTGTCCCATGACCAGAGATGACACACTTGATTGCTGGAGTTTTGCATACAGTATTTATGGTAGCCATACATTTTGTAACCGGCCACAGATTTGTAATAGTTGCATATGTTGCAATACCTCATAAAAATGTGAAGCTA

Fln Alignment:

Contig5608___LIFMAMFWGYFPLFTAIFAFPQEKAILAKERRSDMYCLSAYFXXXXXXXXXXXXXXNAVFMVIVYLMAHLRMSVGIFLLTILASFLDVVTSQGLGLAIGAATMDLKKGTTLASVVVLAFMISGGYFVQHIPVFMSWIRYCSFQYYTFKLLMKVQYSDDQPYDCVGPGRCRSLASSPAIRGTNLGGGGSEVLALLIMIVGYRIIAYIALRRMKLAV
B8LNF9______________IFFIAVFWGFFPVFTAIFTFPQERAMLSKERAVDMYRLSAYFMARILSDLPLDLFLPIGFLLIVYFMAHLRMTVTAFLLTMLTTFLSIVASQGLGLAIGAAFMDLKKATTLASVTMMAFMLAGGFFVQRVHPFIKWIRYLSFNYYTYKILLKIQYDADQLYDCSSPSGCKSIATSSSLRGIPLDGGIKEATVMLIMVFGYRLLAYFSLLRMKLRV

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
404	87		12		0.992554
405			87	12	0.992554
407	87			12	0.992554
408		87	12		0.992554
410		14		85	0.993533
412		85		14	0.993533
413		85		14	0.993533
416		14		85	0.993533
418			14	85	0.993533
422		14		14	0.984337
447			14	85	0.993533
448	14			85	0.993533
450	85	14			0.993533
451			85	14	0.993533
453	85		14		0.993533
454		14		85	0.993533
456	85		14		0.993533
461		14		85	0.993533
493		87		12	0.992554
495	87			12	0.992554
497		85	14		0.993533
498	85			14	0.993533
500	14	85			0.993533
507	85		14		0.993533
516	14		85		0.993533
518		83		16	0.994512
520	16	83			0.994512
549		80		20	0.995493
550		20	80		0.995493
627	85		14		0.993533
628		14		85	0.993533
630	85		14		0.993533
633	14		85		0.993533
636	14			85	0.993533
701	76	15		7	0.999983
706	76		15	7	0.999983
707		84		15	0.999986
708	84		15		0.999986
710		15	84		0.999986
711	84	15			0.999986
714			15	84	0.999986
722		21	73	5	1.0
723	5	5	73	15	1.0
725			15	84	1.0
726			15	84	1.0
727	84	15			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain