SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5585

Length: 2967 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene5585
ATCGTTTTCCTATTAAGAAAAAAAGTCCCCTTTACGTTTTAACTTTTGGGTTTTAGGTTTTAGGCCGGCCATTCAATTAGCATGACAAAGAAGAAGTTCAACTTAATCATCGTCACCGTTTGCCTTAATCCTACCTGTAGAATTCATTCGTTCGTTTGTTAGAATGGATGCAGTCTGCCGGCATGTTGCTTTGACAGCACCGGCCACTCATCTACCAAATTAGGTGGCTCGTTTATTTCGTCATGATATCGTCACTAGGAGGTGAGCGGTTCGAAACCGACCAAAGCCAAGGGCCGTCCCCATTACTGTCTTTGGAACTACCGGCGAAACAGATCATCATATCATAGAAATCAGAGAAATACGGCCGTAGATTTTTTTTTGTTCATAAATACAACCCAACTGTAATGCGCGAGGGGTATGACAAAGACGACCACCCTCTGTCTCTTGTCAGCTTTAAAAGCCACAAAGCTCTAGCCTATTGGAGACATTATTTTGTAGTTCTTCCAGAGATTCCAAAGTCTCCTGGACCAGTTGGGACTTGAGAGTTGAATGGCTTCATCAGTCTCCACAGGCCTGTAGTTGGAAACATCTCACTCAATCCAAAATTCTATTGTAAATTGGATTCGCAGTATTTTTGGCAAGGATATCAATAAGCAAGAGAGTGTTAGCCATCATGTACAGAGATTCAGCCCCTCTTTCGGACTGGCCTTGGGCTCAATTGGGTAGCTTGAAGTATATTCTTTATGGTCCGCTGGTAGCCAAGGCTTTGTATGCCCATTTGGGTGGAGGCTACGAGGCTGATCAAAACTGGTGCTTCCATGTTTTATGGATAACTGCCTTAAGGTGTCTCATCTGTCAAGCTTGGCACAGTTTTTGCAATATGCATTTTCTGACAAAGAACCACAAGATTAGGAAACATGGTGTTGAATATGAGCAGATCGACAGAGAATGGGATTGGGATAATTTCGTTATACTACAGGCATACATGGCAATTGCTGCTCACCACTTCTTGCCATTTCTCCGAGCCATGCCCTTTTGGAATTCACAGGGATTGATATATCTTATTGTTCTTCACATGGGACCGGCAGAGGCTTTGTATTATTGGGCACACAGAGCGTTTCATCATGATTTTCTCTTTAGTAGATATCACTCGCTTCATCACGCCTCTGTTACAGTGCAACCCTCAACAGCTGGAACTGCTACCTTTCTGGAACACTTGTTTCTCACATTCATCATGGCAATACCCATCTTAGGAGCTTCATGGCTGGGGAAAGGATCAATCCTCCTGGTGTACCTCTATATTTTATGTTTTGACTTTCTGAGATGTATGAGCCACTGCAATGTGGAAGTGGTGCCCATGTTCATTTTTCGTTGCATGCCACCACTTAAATTCCTGATCTGCACGCCATCGTACCACAGTCTACATCATACGGAAACAGACACCAACTTTTGCCTGTTCATGCCAGCTTATGATTACCTGGCAAACACACAAAACAAAAACTCGTGGCTTCTGCATCAGTCTATCCGTGAAGGACAAGCGGACAGGGTACCAGACTTTGTTTTCCTGGCTCATGTGGTGGACCTGCTTTCTTCCCTTCATGTGCCGTTTGTGTTTCGTTCGTTTTCCTCCACGCCCTTCTCAACACGATGGTTTCTCCTTCCCATCTGGTCGTTCACCATTCCTGTTATGTTTGCTATGTGGGCATGGGCAAAACCGTTCGTCCATACCTTCTATATATTAAGGGGGCGTCTCCATTACACTTGGGTTATCCCCAGATTCGGCTTTCAGTATTTCTTGCCATTCGCCCAGGAAGGGATCAATAATCTCATCGAGGATGCAATTCTGAGTGCTGATAAACTGGGTGTCAAGGTCATAAGCCTTGCAGCTCTGAACAAGAATGAAGCTCTGAATGGGGGAGGTACTTTGTTCGTTCAGAAACATCCAAATTTGAGAGTGCGAGTTGTACATGGAAATACCTTGACAGCAGCAGTCATTATTAATGAGATCCGTCCTGATGTCAAGGAGGTGTTCTTGACAGGAGCAACTTCCAAACTTGGCCGTGCTATTGCTCTTTATCTTTGCAGAAAACAAGTTCGTGTGTTGATGTTAACTTCTTCAACAGAACGCTTTCAAGCGATTCAGAGAGAGGCTCCAGTCGAATGTCAAAAATTCCTTGTTCATGTTACAAAGTATCAAGCTGGTCAAAACTGCAAGACATGGATAGTAGGGAAATGGATCTCTTTCAGGGAACAGAATTGGGCCCCATCAGGAACACATTTCCATCAGTTTGTTGTCCCACCTATATTCCAACTTAGGAGGGACTGCACATATGGAAAGCTGGCAGCCATGGAATTGCCAGAGGATGTGGAAGGATTGGGATCGTGTGAGTATACCATGTCAAGGAGAATAGTCCACGCTTGTCATGCTGGAGGCGTAGTACACTCATTGGAGGGATGGGAACATCACGAAGTCGGAGCCATCGATGTCGATAGAATTGATATAGTGTGGAAGGAAGCCATTAAGCATGGCCTGAAGGCTGTCCAGTAAAAACTCAGAAAGCTTTCTTCAAAGCTTCAAATAGATATTTTTTTTCTTCTGATGTCTGCATGACCAAATTCAACAAAAACATTTATTTGCTCATGACAGGAAGTTCTAACTGAAGCTTGTTGCTATTTCTTTTATCATTTTTTATTGTAACGTTGCCCACCCCATTGGCAGGGCATGTATGTGTGTATACGAATAAAGATATCTCCACTGTGAAGATATCTGGATCTCACAATAAATCTATAGCTCCAGCAAAATTACTATGCTTATAAGTAGCATATCTCCACCCCAATGCAACGCTATTGGAGCTTTGTATAGTAGTTGAAACTCTTTAATCTCTATTGATAATAACTCCATACGTTTCCAATTATAAGTTCCAATCTTTGAGTTTAATTGTCTTATAAATAAATCACTGAAATTGT

Ace file of the UniGene sp_v2.0_unigene5585

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Wax2_C multi-domain protein	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	protein wax2-like	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	76%
Blast2go	pollen sperm cell differentiation	GO:0048235	Biological Process	76%
Blast2go	cuticle hydrocarbon biosynthetic process	GO:0006723	Biological Process	76%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	76%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	76%
Blast2go	iron ion binding	GO:0005506	Molecular Function	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%
Blast2go	integral to membrane	GO:0016021	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A835

Fln msg:

Fln protein: MYRDSAPLSDWPWAQLGSLKYILYGPLVAKALYAHLGGGYEADQNWCFHVLWITALRCLICQAWHSFCNMHFLTKNHKIRKHGVEYEQIDREWDWDNFVILQAYMAIAAHHFLPFLRAMPFWNSQGLIYLIVLHMGPAEALYYWAHRAFHHDFLFSRYHSLHHASVTVQPSTAGTATFLEHLFLTFIMAIPILGASWLGKGSILLVYLYILCFDFLRCMSHCNVEVVPMFIFRCMPPLKFLICTPSYHSLHHTETDTNFCLFMPAYDYLANTQNKNSWLLHQSIREGQADRVPDFVFLAHVVDLLSSLHVPFVFRSFSSTPFSTRWFLLPIWSFTIPVMFAMWAWAKPFVHTFYILRGRLHYTWVIPRFGFQYFLPFAQEGINNLIEDAILSADKLGVKVISLAALNKNEALNGGGTLFVQKHPNLRVRVVHGNTLTAAVIINEIRPDVKEVFLTGATSKLGRAIALYLCRKQVRVLMLTSSTERFQAIQREAPVECQKFLVHVTKYQAGQNCKTWIVGKWISFREQNWAPSGTHFHQFVVPPIFQLRRDCTYGKLAAMELPEDVEGLGSCEYTMSRRIVHACHAGGVVHSLEGWEHHEVGAIDVDRIDIVWKEAIKHGLKAVQ*

Protein Length: 626

Fln nts: ATCGTTTTCCTATTAAGAAAAAAAGTCCCCTTTACGTTTTAACTTTTGGGTTTTAGGTTTTAGGCCGGCCATTCAATTAGCATGACAAAGAAGAAGTTCAACTTAATCATCGTCACCGTTTGCCTTAATCCTACCTGTAGAATTCATTCGTTCGTTTGTTAGAATGGATGCAGTCTGCCGGCATGTTGCTTTGACAGCACCGGCCACTCATCTACCAAATTAGGTGGCTCGTTTATTTCGTCATGATATCGTCACTAGGAGGTGAGCGGTTCGAAACCGACCAAAGCCAAGGGCCGTCCCCATTACTGTCTTTGGAACTACCGGCGAAACAGATCATCATATCATAGAAATCAGAGAAATACGGCCGTAGATTTTTTTTTGTTCATAAATACAACCCAACTGTAATGCGCGAGGGGTATGACAAAGACGACCACCCTCTGTCTCTTGTCAGCTTTAAAAGCCACAAAGCTCTAGCCTATTGGAGACATTATTTTGTAGTTCTTCCAGAGATTCCAAAGTCTCCTGGACCAGTTGGGACTTGAGAGTTGAATGGCTTCATCAGTCTCCACAGGCCTGTAGTTGGAAACATCTCACTCAATCCAAAATTCTATTGTAAATTGGATTCGCAGTATTTTTGGCAAGGATATCAATAAGCAAGAGAGTGTTAGCCATC_-_ATGTACAGAGATTCAGCCCCTCTTTCGGACTGGCCTTGGGCTCAATTGGGTAGCTTGAAGTATATTCTTTATGGTCCGCTGGTAGCCAAGGCTTTGTATGCCCATTTGGGTGGAGGCTACGAGGCTGATCAAAACTGGTGCTTCCATGTTTTATGGATAACTGCCTTAAGGTGTCTCATCTGTCAAGCTTGGCACAGTTTTTGCAATATGCATTTTCTGACAAAGAACCACAAGATTAGGAAACATGGTGTTGAATATGAGCAGATCGACAGAGAATGGGATTGGGATAATTTCGTTATACTACAGGCATACATGGCAATTGCTGCTCACCACTTCTTGCCATTTCTCCGAGCCATGCCCTTTTGGAATTCACAGGGATTGATATATCTTATTGTTCTTCACATGGGACCGGCAGAGGCTTTGTATTATTGGGCACACAGAGCGTTTCATCATGATTTTCTCTTTAGTAGATATCACTCGCTTCATCACGCCTCTGTTACAGTGCAACCCTCAACAGCTGGAACTGCTACCTTTCTGGAACACTTGTTTCTCACATTCATCATGGCAATACCCATCTTAGGAGCTTCATGGCTGGGGAAAGGATCAATCCTCCTGGTGTACCTCTATATTTTATGTTTTGACTTTCTGAGATGTATGAGCCACTGCAATGTGGAAGTGGTGCCCATGTTCATTTTTCGTTGCATGCCACCACTTAAATTCCTGATCTGCACGCCATCGTACCACAGTCTACATCATACGGAAACAGACACCAACTTTTGCCTGTTCATGCCAGCTTATGATTACCTGGCAAACACACAAAACAAAAACTCGTGGCTTCTGCATCAGTCTATCCGTGAAGGACAAGCGGACAGGGTACCAGACTTTGTTTTCCTGGCTCATGTGGTGGACCTGCTTTCTTCCCTTCATGTGCCGTTTGTGTTTCGTTCGTTTTCCTCCACGCCCTTCTCAACACGATGGTTTCTCCTTCCCATCTGGTCGTTCACCATTCCTGTTATGTTTGCTATGTGGGCATGGGCAAAACCGTTCGTCCATACCTTCTATATATTAAGGGGGCGTCTCCATTACACTTGGGTTATCCCCAGATTCGGCTTTCAGTATTTCTTGCCATTCGCCCAGGAAGGGATCAATAATCTCATCGAGGATGCAATTCTGAGTGCTGATAAACTGGGTGTCAAGGTCATAAGCCTTGCAGCTCTGAACAAGAATGAAGCTCTGAATGGGGGAGGTACTTTGTTCGTTCAGAAACATCCAAATTTGAGAGTGCGAGTTGTACATGGAAATACCTTGACAGCAGCAGTCATTATTAATGAGATCCGTCCTGATGTCAAGGAGGTGTTCTTGACAGGAGCAACTTCCAAACTTGGCCGTGCTATTGCTCTTTATCTTTGCAGAAAACAAGTTCGTGTGTTGATGTTAACTTCTTCAACAGAACGCTTTCAAGCGATTCAGAGAGAGGCTCCAGTCGAATGTCAAAAATTCCTTGTTCATGTTACAAAGTATCAAGCTGGTCAAAACTGCAAGACATGGATAGTAGGGAAATGGATCTCTTTCAGGGAACAGAATTGGGCCCCATCAGGAACACATTTCCATCAGTTTGTTGTCCCACCTATATTCCAACTTAGGAGGGACTGCACATATGGAAAGCTGGCAGCCATGGAATTGCCAGAGGATGTGGAAGGATTGGGATCGTGTGAGTATACCATGTCAAGGAGAATAGTCCACGCTTGTCATGCTGGAGGCGTAGTACACTCATTGGAGGGATGGGAACATCACGAAGTCGGAGCCATCGATGTCGATAGAATTGATATAGTGTGGAAGGAAGCCATTAAGCATGGCCTGAAGGCTGTCCAGTAA___AAACTCAGAAAGCTTTCTTCAAAGCTTCAAATAGATATTTTTTTTCTTCTGATGTCTGCATGACCAAATTCAACAAAAACATTTATTTGCTCATGACAGGAAGTTCTAACTGAAGCTTGTTGCTATTTCTTTTATCATTTTTTATTGTAACGTTGCCCACCCCATTGGCAGGGCATGTATGTGTGTATACGAATAAAGATATCTCCACTGTGAAGATATCTGGATCTCACAATAAATCTATAGCTCCAGCAAAATTACTATGCTTATAAGTAGCATATCTCCACCCCAATGCAACGCTATTGGAGCTTTGTATAGTAGTTGAAACTCTTTAATCTCTATTGATAATAACTCCATACGTTTCCAATTATAAGTTCCAATCTTTGAGTTTAATTGTCTTATAAATAAATCACTGAAATTGT

Fln Alignment:

Contig5585___LSDWPWAQLGSLKYILYGPLVAKALYAHLGGGYEADQNWCFHVLWITALRCLICQAWHSFCNMHFLTKNHKIRKHGVEYEQIDREWDWDNFVILQAYMAIAAHHFLPFLRAMPFWNSQGLIYLIVLHMGPAEALYYWAHRAFHHDFLFSRYHSLHHASVTVQPSTAGTATFLEHLFLTFIMAIPILGASWLGKGSILLVYLYILCFDFLRCMSHCNVEVVPMFIFRCMPPLKFLICTPSYHSLHHTETDTNFCLFMPAYDYLANTQNKNSWLLHQSIREGQADRVPDFVFLAHVVDLLSSLHXXXXXXXXXXXXXXXXWFLLPIWSFTIPVMFAMWAWAKPFVHTFYILRGRLHYTWVIPRFGFQYFLPFAQEGINNLIEDAILSADKLGVKVISLAALNKNEALNGGGTLFVQKHPNLRVRVVHGNTLTAAVIINEIRPDVKEVFLTGATSKLGRAIALYLCRKQVRVLMLTSSTERFQAIQREAPVECQKFLVHVTKYQAGQNCKTWIVGKWISFREQNWAPSGTHFHQFVVPPIFQLRRDCTYGKLAAMELPEDVEGLGSCEYTMSRRIVHACHAGGVVHSLEGWEHHEVGAIDVDRIDIVWKEAIKHGLKAVQ
D5A835______________LLDWPWAYLESLKYVLYGPLIAKAVHTNLYGGKEAD-NWCFHILLLTSLRYVTYQLWATFSNMYCLSHRYKICKKGAEFDQMDREWDWDNFLLLQAFMATAAHHFLPFFRDMPAWNAGGLICLAILRMGPAEVLYYWAHRAFHKDFLFQRYHSLHHAAIVLQPQTAGTATFLEHIGLTIIMAVPMVGASWMGGASMGMIYIYCLLFDFLRYMGHSNVEIVPETIFRCLPPLKYLIYTPLYHTLHHTEMDTNFCPFMPLYDYLGHTINSKSWDLHRSMSAGQVEDVPDYVFLAHIVDVLSSLHVRFLLRGFCSTPFATWWFLLPLWPVVIPVALAMWVWAKTFVNTGHRLKGRLHQTWIVPRFGFQYFIPFAQAGINNLIQDAILSADKMGVKVISLAALNKNEALNGGGTLFVNRLPDLRVRVVHGNTLTAAVILNELNPDVKEVFLTGATSKLGRVIALYLCRKGIRVMMLTYSKERFKSIQSEAPPEFQNFLVQVTKYEAAQNCKTWIVGKWIAYKEQTWAPVGCHLHQFVVPPIFELRKDCTYGKLAGMQLPDAVEGLSTCEYTMPRRCVHACHAGGILHSLEGWEHHEVGAIDVNKIDMVWEAALKHGFKPMK

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
91	87			12	0.992554
92	87			12	0.992554
96		12	87		0.992554
100	87			12	0.992554
101	87			12	0.992554
105	87			12	0.992554
106	87		12		0.992554
319		33		66	0.997452
2897	10	90			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain