SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5584

Length: 2550 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene5584
TTGGCAGGGAGCATTCCCATTTCTTTGTCAAACATTTCTACTTTGACCATCTTGACAATTTCCCAAAACAAACTCATTGGCACCATTCCACAAGAGTTGGGCTTACTCACCAATTTGAATTATCTTAATTTATGGGGAAATCAATTGAGTGGAAACATACCAATTTCTATTGGAAATTGTTCTAACCTCAAACTGCTTAGTTTAGGTAACAACATGTTGAGTGGGAGTGTGCCACTAGAGTTAGGTAAGCTATCACTTCTTGAAAAGTTAGATTTACCTGACAATGATCTTGATAGTGGCACCACTACAACCATGCCCTTTCTTGTAGCTCTTACCAATTGTTCCCACCTACAAAAAATAAACTTGAGGAACAATAAAGTAAGTGGTGTCTTGCCTCTTGACATAGGACACCTTTCTACCAATTTGTCTTTCTTGTCATTAGGAAACAATAGAATAAAAGGAAACATCCCTCCACATATTGGTAATCTTACCAGCCTGAACTATCTAAATTTAAGTGGAAACCTTTTGACTGGAAACATTCCACCATTAGGAAACCTTAAAATGATAGAAAGATTGTGTTTAAGTAACAATAGATTAGAAGGAAACATCCCCGATGACTTTGAACAATTACAACACCTTGGGCTATTGGACATCAGTGAAAACAACCTCTCTGGAAGGATTCCCAATTCCCTTGCACCCCTTAAACAACTAAGAAGAGTCCTCCTCCATCACAACCAATTATCAGGAAGCATACCTACCAGCTTAGGAAGTTGTCTAAATTTAGAATTGCTTGACCTATCTCACAATATGCTCACTGGTAGCATACCACGAGAAATCGCCAAACTTTACAATTTACATTTCTATTTGAACTTGTCATGGAATTTATTAGAAGGCTCCTTGCCCTTAGAGATTGGTAAAATTTCAATGGCTCAAGCTATAGACATTTCTTCCAACCGATTGATTGGGGCAATTCCACCTACACTTGGAAGCTGCAGTGAACTACAATCATTGAATTTATCTCAAAATTCCTTCCAAGGCTCTATTCCAGATTCCTTTGAAAAATTACAAAGCCTCTTGAGCCTAGATCTCTCTTCCAACTCCTTATCAGGTACAATACCAATTACTCTTGAGAAGCTGAAAATGCTTCAATCTTTGAATTTGTCTTTCAACCACCTCACAGGGGAGATTCCGAAAGGAGGGATTTTTGCAAATCAAACAAGTGCCATCTTTTTAATTGGAAATCCCGGTCTTTGTGGACCACACATATTCAATTTATCTGCATGTCCAACGCCAAGAAGTCATTTTCCATTTGTGAAAAGAATATTACTGCCAATCATTGGAGCTCTTGTTTTTATACTATGTTGTCTACTTTTGGTATACTTTTGGAAAGGAAATATACATATGGAAAACTTCAATTTCTCACAAGCTATTTTCCAAAAGCTAGTGCACCAAAGGATCTCATATCAAGAGCTTCACATAGCAACTAATGGGTTTTCCAATGCCAACTTGTTGGGAAAAGGAAATTATGGGTTAGTGTATAAAGGAATTTTGAGTGATGGTTCATTTGTTGCTGTTAAGGTTCTCCAGTTGCAAAATGAACAAGTTGAAAAGAGTTTTAAAGCAGAATGTAGTGTCTTGCAAAAGGTTCGGCATAGAAATCTGGTGAGAGTCATAACTTCATGTTCCAACCTCCAATTCAAAGCTTTGGTGTTCGAGTTTATGCCTAAGGGAAGTTTAGAGAATCATTTGTATCCTGATAGAGATGATAACAATGATGAAGATTTGTGTGAATTGAGGTTGAAAACACGATTAGACATTGCCATAGATGTGGCCCATGCCATGGAATATCTTCACCATGATTCTTTTGTGCAAGTAGTTCATTGTGATATAAAACCCAGCAATGTACTTTTGGATGAAGACATGTCAGGCCATGTCACAGATTTTGGTATTGCAAGGCTAATTGGTGCAACCTCAAATGATTCACTTACATCATCACTTGCTTTGAAAGGATCAATGGGTTACATTGCCCCAGAGTATGGATTGGCTGCCACAATTTCCACAAAAGGAGATGTTTATAGCTTTGGTATTTTGTTACTAGAAATGCTTACTAGAAAGCGATCAACTAGTGACATGTTTGTTGGAGAGCTAAATTTGCACAAGTGGGTGAGCCTTGCATTTCCAAATAGAGTGAAGGAGGTAATTGATGAATTGTTTTTTGAAGAGGTGGATGAATATGATTTTGAAGAAAATAATATATACAATTGCCTCTTTTCTTTGCTACATGTTGGCTTGAGTTGTTCAAAAGATTCACCTGAAGAAAGACCAACCATGAGAGAAGTGGCAATGGTATTGGAGAGTATCAGAAAGGATTTGATGGCAACTTCAGTTCCTTCTCAAAGATTGAGACGAAGCATATCTAATTTGCTTAGCAATACAAATGAAGCAAGCAATGTTGCAATTGCCTCAAATGATCAAAGTTCTTCTACAATATAGTTTGTGCAAAGTACAATAGGCAATGATTTGAGTCTTGTTAGTCTGCTTACAATAACA

Ace file of the UniGene sp_v2.0_unigene5584

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	7.0e-19	33%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	32%
Blast2go	protein	-	-	0.0	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	58%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 22 aas, your sequence is shorter than subject: 831 - 1145

Fln protein: LAGSIPISLSNISTLTILTISQNKLIGTIPQELGLLTNLNYLNLWGNQLSGNIPISIGNCSNLKLLSLGNNMLSGSVPLELGKLSLLEKLDLPDNDLDSGTTTTMPFLVALTNCSHLQKINLRNNKVSGVLPLDIGHLSTNLSFLSLGNNRIKGNIPPHIGNLTSLNYLNLSGNLLTGNIPPLGNLKMIERLCLSNNRLEGNIPDDFEQLQHLGLLDISENNLSGRIPNSLAPLKQLRRVLLHHNQLSGSIPTSLGSCLNLELLDLSHNMLTGSIPREIAKLYNLHFYLNLSWNLLEGSLPLEIGKISMAQAIDISSNRLIGAIPPTLGSCSELQSLNLSQNSFQGSIPDSFEKLQSLLSLDLSSNSLSGTIPITLEKLKMLQSLNLSFNHLTGEIPKGGIFANQTSAIFLIGNPGLCGPHIFNLSACPTPRSHFPFVKRILLPIIGALVFILCCLLLVYFWKGNIHMENFNFSQAIFQKLVHQRISYQELHIATNGFSNANLLGKGNYGLVYKGILSDGSFVAVKVLQLQNEQVEKSFKAECSVLQKVRHRNLVRVITSCSNLQFKALVFEFMPKGSLENHLYPDRDDNNDEDLCELRLKTRLDIAIDVAHAMEYLHHDSFVQVVHCDIKPSNVLLDEDMSGHVTDFGIARLIGATSNDSLTSSLALKGSMGYIAPEYGLAATISTKGDVYSFGILLLEMLTRKRSTSDMFVGELNLHKWVSLAFPNRVKEVIDELFFEEVDEYDFEENNIYNCLFSLLHVGLSCSKDSPEERPTMREVAMVLESIRKDLMATSVPSQRLRRSISNLLSNTNEASNVAIASNDQSSSTI*

Protein Length: 832

Fln nts: TTGGCAGGGAGCATTCCCATTTCTTTGTCAAACATTTCTACTTTGACCATCTTGACAATTTCCCAAAACAAACTCATTGGCACCATTCCACAAGAGTTGGGCTTACTCACCAATTTGAATTATCTTAATTTATGGGGAAATCAATTGAGTGGAAACATACCAATTTCTATTGGAAATTGTTCTAACCTCAAACTGCTTAGTTTAGGTAACAACATGTTGAGTGGGAGTGTGCCACTAGAGTTAGGTAAGCTATCACTTCTTGAAAAGTTAGATTTACCTGACAATGATCTTGATAGTGGCACCACTACAACCATGCCCTTTCTTGTAGCTCTTACCAATTGTTCCCACCTACAAAAAATAAACTTGAGGAACAATAAAGTAAGTGGTGTCTTGCCTCTTGACATAGGACACCTTTCTACCAATTTGTCTTTCTTGTCATTAGGAAACAATAGAATAAAAGGAAACATCCCTCCACATATTGGTAATCTTACCAGCCTGAACTATCTAAATTTAAGTGGAAACCTTTTGACTGGAAACATTCCACCATTAGGAAACCTTAAAATGATAGAAAGATTGTGTTTAAGTAACAATAGATTAGAAGGAAACATCCCCGATGACTTTGAACAATTACAACACCTTGGGCTATTGGACATCAGTGAAAACAACCTCTCTGGAAGGATTCCCAATTCCCTTGCACCCCTTAAACAACTAAGAAGAGTCCTCCTCCATCACAACCAATTATCAGGAAGCATACCTACCAGCTTAGGAAGTTGTCTAAATTTAGAATTGCTTGACCTATCTCACAATATGCTCACTGGTAGCATACCACGAGAAATCGCCAAACTTTACAATTTACATTTCTATTTGAACTTGTCATGGAATTTATTAGAAGGCTCCTTGCCCTTAGAGATTGGTAAAATTTCAATGGCTCAAGCTATAGACATTTCTTCCAACCGATTGATTGGGGCAATTCCACCTACACTTGGAAGCTGCAGTGAACTACAATCATTGAATTTATCTCAAAATTCCTTCCAAGGCTCTATTCCAGATTCCTTTGAAAAATTACAAAGCCTCTTGAGCCTAGATCTCTCTTCCAACTCCTTATCAGGTACAATACCAATTACTCTTGAGAAGCTGAAAATGCTTCAATCTTTGAATTTGTCTTTCAACCACCTCACAGGGGAGATTCCGAAAGGAGGGATTTTTGCAAATCAAACAAGTGCCATCTTTTTAATTGGAAATCCCGGTCTTTGTGGACCACACATATTCAATTTATCTGCATGTCCAACGCCAAGAAGTCATTTTCCATTTGTGAAAAGAATATTACTGCCAATCATTGGAGCTCTTGTTTTTATACTATGTTGTCTACTTTTGGTATACTTTTGGAAAGGAAATATACATATGGAAAACTTCAATTTCTCACAAGCTATTTTCCAAAAGCTAGTGCACCAAAGGATCTCATATCAAGAGCTTCACATAGCAACTAATGGGTTTTCCAATGCCAACTTGTTGGGAAAAGGAAATTATGGGTTAGTGTATAAAGGAATTTTGAGTGATGGTTCATTTGTTGCTGTTAAGGTTCTCCAGTTGCAAAATGAACAAGTTGAAAAGAGTTTTAAAGCAGAATGTAGTGTCTTGCAAAAGGTTCGGCATAGAAATCTGGTGAGAGTCATAACTTCATGTTCCAACCTCCAATTCAAAGCTTTGGTGTTCGAGTTTATGCCTAAGGGAAGTTTAGAGAATCATTTGTATCCTGATAGAGATGATAACAATGATGAAGATTTGTGTGAATTGAGGTTGAAAACACGATTAGACATTGCCATAGATGTGGCCCATGCCATGGAATATCTTCACCATGATTCTTTTGTGCAAGTAGTTCATTGTGATATAAAACCCAGCAATGTACTTTTGGATGAAGACATGTCAGGCCATGTCACAGATTTTGGTATTGCAAGGCTAATTGGTGCAACCTCAAATGATTCACTTACATCATCACTTGCTTTGAAAGGATCAATGGGTTACATTGCCCCAGAGTATGGATTGGCTGCCACAATTTCCACAAAAGGAGATGTTTATAGCTTTGGTATTTTGTTACTAGAAATGCTTACTAGAAAGCGATCAACTAGTGACATGTTTGTTGGAGAGCTAAATTTGCACAAGTGGGTGAGCCTTGCATTTCCAAATAGAGTGAAGGAGGTAATTGATGAATTGTTTTTTGAAGAGGTGGATGAATATGATTTTGAAGAAAATAATATATACAATTGCCTCTTTTCTTTGCTACATGTTGGCTTGAGTTGTTCAAAAGATTCACCTGAAGAAAGACCAACCATGAGAGAAGTGGCAATGGTATTGGAGAGTATCAGAAAGGATTTGATGGCAACTTCAGTTCCTTCTCAAAGATTGAGACGAAGCATATCTAATTTGCTTAGCAATACAAATGAAGCAAGCAATGTTGCAATTGCCTCAAATGATCAAAGTTCTTCTACAATATAG___TTTGTGCAAAGTACAATAGGCAATGATTTGAGTCTTGTTAGTCTGCTTACAATAACA

Fln Alignment:

Contig5584___LAGSIPISLSNISTLTILTISQNKLIGTIPQEXXXXXXXXXXXXXXXQLSGNIPISIXXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXNDLDSGTTTTMPFLVALTNCSHLQKINLRNNKVSGVLPLDIGHLST-----------------------NLSFLSLGNNRIKGNIPPHIXXXXXXXXXXXXXXXXXXXIPP-LGNLKMIERLCLSNNRLEGNIPDDFEQLQHLGLLDISENNLSGRIPNSLAPLKQLRRVLLHHNQLSGSIPTSLGSCLNLELLDLSHNMLTGSIPREIAKLYNLHFYLNLSWNLLEGSLPLEIGKISMAQAIDISSNRLIGAIPPTLGXXXXXXXXXXXXXXXXXXIPDSFEKXXXXXXXXXXXXXXXGTIPITLEKLKMLQSLNLSFNHLTGEIP-----------------------KGGIFANQTSAIFLIGNPGLCGPHIFNLSACPTPRSHFPFVKRIL-LPIIGALVFILCCLLLVY-FWKGNIHMENFNFSQAIFQKLVHQRIS-YQELHIATNGFSNA----NLLGKGNYGLVYKGILSDGSFVAVKVLQLQNE-QVEK-----SFKAECSVLQKVRHRNLVRVITSCSNLQFKALVFEFMPKGSLENHLYPDRDDNNDEDLCELRLKTRLDIAIDVAHAMEYLHHDSFVQVVHCDIKPSNVLLDEDMSGHVTDFGIARLIGATSNDSLTSSLALKGSMGYIAPEYGLAATISTKGDVYSFGILLLEMLTRKRSTSDMFVGELNLHKWVSLAFPNRVKEVIXXXXXXXXXXXXXXXNNIYNCLFSLLHVGLSCSKDSPEERPTMREVAMVLESIRKD
Q9FEU2______________LSGTIPAELGNCSELVNLYLYENRLSGAIPRELGKLQKLEKLYLWDNELDGSIPAELGSCSSLKFVDLSTNSLSGSIPDSFGSLKNLSELEITDNNVSGSIPA------ALANCTELTQIQLYNNQISGQMPAELGALKKLTVLFLWQNNLEGPIPSSLGSCDNLQSLDLSHNRLTGSIPPSLFEIKNLTKLLLLSNELTGALPPEIGNCVALSRLRLGNNRLLNQIPREIGKLENLVFLDLAMNQFSGSIPAEIGGCSQLQMLDLHGNRLGGELPRALGFLHGLQVVDLSANELTGLIPANLGNLVALT-KLTLNGNALSGAIPWEISRCTNLQLLDLSLNRFSGQIPPEMGKCKRLEIALNLSWNNLS-----------------------GSIPAQFSGLTKLASLDLSHNLLSGNLSALAQLSESCFSQHFFQRFFRVSARYQVFSDLCLPSDLSGNAALCTSEEVCFMS-----SGAHFEQRVFEVKLVMILLFSVTAVMMILGIWLVTQSGEWVTGKWRIPRSGGHGRLTTFQKLNFSADDVVNALVDSNIIGKGCSGVVYKAEMGNGDVIAVKKLWTGKESECEKVRERDSFSAEVNTLGAIRHRNIVRLLGCCTNGRSKLLMYDYMPNGSLGGLLHEKRS--------MLDWEIRYNIVLGVRRGLSYLHHDCRPPILHRDVKANNILLGSQYEPYLADFGLAKLVD--SADFNRSSTTVAGSYGYIAPEYGYTMKITQKIDVYSFGVVLLEVVTGKQPIDPTIPEGVHLVEWARDAVQS--NKLADSAEVIDPRLQGRPDTQIQEML-QVLGVAFLCVNSNPDERPTMKDVAALLKEIRHD

SNPs (tot: 154)

Position	A %	C %	G %	T %	Probability
77		25		75	0.996473
96	16	16	66		0.988813
97		16		83	0.994512
99			83	16	0.994512
103		33		66	1.0
104			16	83	0.994512
105	50	33		16	1.0
107	16			83	0.994512
109	83			16	0.994512
111	16	83			0.994512
122	83	16			0.994512
126	16			83	0.994512
127	50		16	33	1.0
128	83	16			0.994512
134		16	83		0.994512
144	83		16		0.994512
193		33	16	50	1.0
194	16			83	0.994512
196	16	83			0.994512
199	66		16	16	0.988813
200	16		83		0.994512
201		16		83	0.994512
202	16	16		66	0.988813
208	66	16		16	0.988813
209	50	50			1.0
210	16	83			0.994512
215	16			83	0.994512
225		50	50		1.0
226	83			16	0.994512
228	16			83	0.994512
235		40		60	1.0
266	50		50		1.0
271		25	50	25	0.995533
273	20			80	0.995493
278	40	60			1.0
279	40			60	1.0
280		40	60		1.0
281	80		20		0.995493
282		60	40		1.0
311	20	80			0.995493
317		80		20	0.995493
318		80	20		0.995493
329		80		20	0.995493
349		75		25	0.996473
352	25	75			0.996473
353	75		25		0.996473
355	50		50		1.0
356	50		25	25	0.995533
358	75			25	0.996473
363	50		50		1.0
364		75		25	0.996473
365			25	75	0.996473
380		20	40	40	1.0
394	40		60		1.0
431	20	20		60	0.99255
432	40			60	1.0
433	16	83			0.994512
439	83			16	0.994512
440		33		66	1.0
443	16		83		0.994512
444			83	16	0.994512
445	83		16		0.994512
446	66		33		1.0
451			16	83	0.994512
493		66	16	16	0.988813
495	33		66		1.0
499	16		66	16	0.988813
500	83			16	0.994512
501	83	16			0.994512
504	83		16		0.994512
518	40		60		1.0
519		20	80		0.995493
532		20		80	0.995493
579			80	20	0.995493
607		80		20	0.995493
655		75	25		0.996473
697	66		33		0.997452
724		75		25	0.996473
748	80		20		0.995493
758	60			40	1.0
772	20			80	0.995493
790			80	20	0.995493
793		40		60	1.0
805		80		20	0.995493
820		20		80	0.995493
871		50		50	1.0
892	80		20		0.995493
923			40	60	1.0
929			80	20	0.995493
943		60		40	1.0
944	60		40		1.0
946		40		60	1.0
1030		80		20	0.995493
1085			80	20	0.995493
1112	80			20	0.995493
1143		25		75	0.996473
1144	25		75		0.996473
1145		75		25	0.996473
2029	33		66		1.0
2030	16	83			0.994512
2031		83		16	0.994512
2036	75	25			1.0
2040	75		25		1.0
2041			12	87	0.992554
2044		25	75		1.0
2045	75	25			1.0
2046		12		87	0.992554
2047	12			87	0.992554
2050		87	12		0.992554
2052	14		85		0.993533
2053		71		28	1.0
2054		28	71		1.0
2057	85			14	0.993533
2058	71		28		1.0
2070	14		85		0.993533
2124		40		60	1.0
2129			20	80	0.995493
2151	16	83			0.994512
2205	88	11			0.923564
2206			11	88	0.923564
2208		10	90		0.90298
2209	90		10		0.90298
2213	90	10			0.90298
2216		11	88		0.923564
2217			11	77	0.968132
2218		11		88	0.923564
2220			11	88	0.923564
2224	88	11			0.923564
2226		11	88		0.923564
2227	88			11	0.923564
2228		11	88		0.923564
2229	11		88		0.923564
2243	40			60	1.0
2274	8	33		58	1.0
2315	88	11			0.923564
2319		11	88		0.923564
2345		11	88		0.923564
2348	88		11		0.923564
2363		11		88	0.923564
2372	12		62	25	1.0
2383		62	37		1.0
2385	62		37		1.0
2387	37			62	1.0
2391			87	12	0.992554
2413	12		87		0.992554
2456		11		88	0.923564
2464		11		88	0.923564
2483		11		88	0.923564
2513	71		28		1.0
2539		20	80		0.995493
2541	20	80			0.995493
2543	16		83		0.994512
2545	20			80	0.995493
2548		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain