SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5497

Length: 1213 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5497

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to Follicular lymphoma variant translocation 1 [Strongylocentrotus purpuratus] ref\|XP_001180217.1\| PREDICTED: similar to Follicular lymphoma variant translocation 1 [Strongylocentrotus purpuratus]	-	-	4.0e-34	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	protein	-	-	0.0	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	57%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	57%

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase	IPR003560	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ20

Fln msg:

Fln protein: MGRRDLASHHFPLYKGITGLTHVTAIIIMDIQHPAIQAITLTVAIVFTTVIVLRWRRPCIIHSLQNKHVVITGGSSGIGLEIAKEAVAQGSYVTLVARNLSNLQKAAEEILKEGHCDQDRINVKVADISDYEAISAAIHESCVWRPLDILVCNAGVTRISYLDQLPIDRIASTVQTNITGTLYTLRAALPLMKQRSSRHCRLALVFMGSLASLYPLYGSGLYTTTKYALRGLAETLRLELLPYNIGVTLVCPGFVETSMLKEIEDSTSDPEFYKIRSKTSFYKRSRAEAPREVAKATLRAAKQGRFLATTGIKGFMLSILSTGLFPADSFGRALIELFLFLPVKVIGYIISAYIYAVIWLNHTCK*

Protein Length: 367

Fln nts: _-_ATGGGGCGTCGTGATTTGGCGTCACACCATTTTCCATTATATAAAGGGATAACAGGGCTAACTCATGTTACTGCAATCATAATCATGGATATCCAACATCCTGCAATTCAAGCAATAACATTAACAGTGGCCATTGTTTTCACCACTGTAATCGTCTTAAGATGGAGGCGCCCCTGCATTATCCATAGTTTGCAAAATAAGCACGTCGTTATAACAGGAGGATCAAGCGGCATTGGCCTTGAAATTGCAAAAGAAGCTGTTGCACAGGGCTCCTACGTCACTTTAGTAGCAAGAAATCTCTCTAATCTTCAAAAGGCAGCTGAAGAAATCCTCAAAGAGGGACACTGTGATCAGGACAGGATCAATGTCAAGGTTGCAGATATAAGTGACTACGAAGCAATTTCTGCAGCCATACATGAATCCTGTGTGTGGAGGCCACTTGATATTCTTGTATGCAACGCTGGGGTTACTCGTATTTCTTATCTGGATCAGCTCCCCATTGACAGAATCGCTTCCACAGTCCAAACCAACATAACTGGAACGCTCTATACATTGCGCGCAGCTCTTCCATTGATGAAGCAGAGGAGCAGCCGCCATTGTCGGTTGGCTCTGGTATTCATGGGCTCGCTTGCTTCTCTGTATCCCTTGTATGGCAGTGGGCTCTACACTACAACTAAATATGCTCTGAGAGGACTCGCTGAAACTCTAAGGCTTGAACTCTTGCCTTACAACATTGGTGTCACCCTAGTTTGCCCTGGGTTCGTAGAGACTTCCATGCTAAAGGAAATTGAAGATAGCACATCAGATCCAGAGTTTTATAAGATCAGAAGTAAGACCAGCTTCTATAAGAGAAGTAGAGCAGAGGCTCCAAGGGAAGTTGCAAAGGCTACTCTAAGAGCTGCTAAACAAGGCAGATTTTTGGCAACAACTGGCATTAAGGGTTTTATGCTGTCTATCTTATCTACTGGGCTCTTCCCTGCTGATTCTTTTGGAAGAGCTCTGATTGAATTGTTTCTCTTTCTTCCAGTCAAGGTGATTGGTTACATCATCTCCGCATATATCTATGCTGTTATATGGTTGAATCATACTTGCAAATGA___AATATGGTGAATCACAGAGCAAACAGTAATGACAATATTTGAAGTCAGATTAGCAACTTCCTATTTATGCTATAACAAATGAATGGTGTTTATGTTCAGTCATGGCAATATTTAG

Fln Alignment:

Contig5497___SLQNKHVVITGGSSGIGLEIAKEAVAQGSYVTLVARNLSNLQKAAEEILKEGHCDQDRINVKVADISDYEAISAAIHESCVWRPLDILVCNAGVTRISYLDQLPIDRIASTVQTNITGTLYTLRAALPLMKQRSSRHCRLALVFMGSLASLYPLYGSGLYTTTKYALRGLAETLRLELLPYNIGVTLVCPGFVETSMLKEIEDSTSDPEFYKIRSKTSFYKRSRAEAPREVAKATLRAAKQGRFLATTGI-KGFMLSILSTGLFPADSFGRALIELFLFLPVKVIGYIISAYIYAVI
A9NZ20______________SLEKKHVVITGGSSGIGFAMAQEVILQGGFVTLISRSYANLQAAVERLVKDLSCDPDRVLSKVADVSDHQAITQAIQEAFQWKPIDFLICNAGLTRGGQLENQPVEDMDLVIRTNLNGTVYPVHAALPLMKERSKEHPG-SIVFIGSQASLFVFYGHSVYTATKYAVKGLAESLKLELTPYDISVSLACPGFVDTPFLDEAE-KEKDEDDIKLLKIVNLYDRKNVEIPKNVAKKVLEGAKQGTFLITTNIYPGLFVSTLARGFLPAESVGRCLLEMIMYFPFRALSLLGANDIHKAI

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
812		64	35		1.0
822		21		78	1.0
922		30		69	1.0
1006	80	20			0.999996
1009	10		90		0.90298
1021		10		90	0.90298
1048	87		12		0.992554
1087		83		16	0.994512
1132		16	83		0.994512
1145			80	20	0.995493
1153	75	25			0.996473
1171		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain