SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5488

Length: 1445 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5488

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F-box/WD-40 repeat-containing protein [Arabidopsis thaliana] sp\|Q9SV01.2\|FBW4_ARATH RecName: Full=F-box/WD-40 repeat-containing protein At3g52030 gb\|AEE78876.1\| F-box/WD-40 repeat-containing protein [Arabidopsis thaliana]	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	f-box wd-40 repeat-containing protein	-	-	63%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Pyrrolo-quinoline quinone beta-propeller repeat	IPR018391	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX76

Fln msg: Overlapping hits, possible frame ERROR between 194 and 167, your sequence is shorter than subject: 349 - 434

Fln protein: PETPPKDWVRQLVRQQHGAALVHGSVQVSCWKGHSTGVNCCRMQMGSILTGVGDxxxxxxxxxxxSLRCVEEYSTPNKASLVDLDFDKCKIVGLVGGDICIWKRHGNSHLLRPRGGPIQRAHCLCYADPEAAIGCGDGTIRIFDMYSSQCSRIFRQHGGAVTCLSIVDEEFLISGTSLGSLSVSDAASGQKIASLRHSTAVTGISCLWVNQGSFQVFSGTTSGHAYSWDLRMYKPLWETRVSPSVIYSMHSQAIDSSTLVVGGIDGVLRIIDANSGQILSSYVATAKMTSISDGMIAKCTAKKVSSPLDKIPKSLRRPITCVAVGLNKVVTVHNDKNIMLWTFQRENV*

Protein Length: 350

Fln nts: TGCCTGAAACACCACCAAAAGACTGGGTCAGACAGCTTGTCAGACAGCAGCATGGGGCAGCACTGGTTCATGGTTCTGTTCAAGTTTCATGTTGGAAAGGCCATTCTACTGGAGTGAACTGTTGTCGAATGCAAATGGGATCAATTTTAACTGGTGTTGGTGATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGTCTTCGTTGTGTGGAGGAATACTCAACTCCAAATAAGGCTTCTTTGGTTGACCTGGACTTTGACAAGTGCAAGATTGTAGGGCTTGTTGGAGGAGACATTTGCATTTGGAAGCGTCATGGGAATAGTCATTTGCTTCGTCCCCGTGGTGGACCTATTCAACGTGCACACTGTTTATGTTATGCAGACCCAGAAGCAGCTATTGGATGTGGGGATGGTACAATTCGCATATTTGACATGTACAGCAGTCAATGCTCTCGTATATTCAGGCAGCATGGTGGTGCTGTGACTTGTCTCTCCATAGTTGATGAGGAGTTCTTAATCAGTGGTACTTCCCTTGGGTCTCTGTCTGTCTCTGATGCAGCTTCTGGGCAGAAAATAGCATCTCTTAGACATTCAACTGCAGTTACAGGTATAAGCTGTCTTTGGGTAAACCAAGGTTCTTTTCAAGTTTTTTCAGGAACAACATCTGGCCATGCATACAGTTGGGATTTACGGATGTACAAGCCACTGTGGGAGACACGAGTAAGCCCCAGCGTGATATATTCTATGCATTCTCAAGCGATAGATTCATCAACACTAGTGGTAGGTGGAATCGATGGTGTTTTACGGATAATTGATGCTAATAGTGGCCAGATCCTTTCCAGCTATGTGGCAACAGCAAAAATGACTAGTATTTCTGATGGGATGATTGCCAAATGCACTGCTAAGAAAGTTAGTTCCCCACTAGATAAAATACCAAAGAGTTTACGACGCCCAATAACATGTGTTGCTGTTGGATTGAACAAGGTTGTGACTGTTCATAATGATAAGAACATAATGTTGTGGACCTTCCAAAGGGAGAATGTTTGATAGTAATTCATATTAGGTTCCTGTGCAGCCCTCCTACCTGGCTGGTGCAATTTGTGGTAGAAATGAATCAATTCACTTGTAACATTTTTTCATTTTGTATTCTTATTGAAATTGGGAATTCTGTGGCAATTCTTGTCAGGCATTTATTTATGTAACACTTCAAATATCAAAGCGATGAGATCGATTACTGCTTTTATCTCTCCTGCACACCATACCAGATCACAAAGATGGTATTAAACCTAGGACACTGCTTGTTAGCTAGCATGCTAGAGCTTTATCTTAAACATTTAATTTGAGCTCCTGCAAGACTTATTATGTAATACTTTCATGATGTTGAGTTTTTTCATTGACATCACTAATGAGTAATTCTGTTTTCTTAAGTTCATGCCACTGGGCA

Fln Alignment:

Contig5488___PETPPKDWVRQLVRQQHGAALVHGSVQVSCWKGHSTGVNCCRMQMGSILTGVGDxxxxxxxxxxSLRCVEEYSTPNKASLVDLDFDKCKIVGLVGGDICIWKRHGNSHLLRPRGGPIQRAHCLCYADPEAAIGCGDGTIRIFDMYSSQCSRIFRQHGGAVTCLSIVDEEFLISGTSLGSLSVSDAASGQKIASLRHSTAVTGISCLWVNQGSFQVFSGTTSGHAYSWDLRMYKPLWETRVSPSVIYSMHSQAIDSSTLVVGGIDGVLRIIDANSGQILSSYVATAKMTSISDGMIAKCTAKKVSSPLDKIPKSLRRPITCVAVGLNKVVTVHNDKNIMLWTFQRENV
A9NX76______________PEMPPKDWVRQLVSQQHRAALVHGSVQVHCWKGHSIGVNCCRMQMGSILTGVGDxxxxxxxxxxSFHCLEEYSTPSKAALVDLDFDESKIVGLVGGDICIWKRHGSSHMLRPRGGPIQHAHCLCYADPEAAIGCRDGTIRIFDMYSNQCSRIFRQHGGAVTCLSIVDEQLLISGTSLGCLSVSDAASGQKIASLRQSTAVTGISCLWVNQGSSQVFSGTTSGHAYSWDLRMYRPLWETRVSPSVIYSMHSQAIDSSTLVLGGIDGVLRIIDANNGQILSSYVATAKMANISDGMIAKCTAKKVSSPLDKIPKSLRRPITCVAIGLNKVVTVHNDKNIMLWTFQRKNV

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
657			14	85	0.993533
658		71	14	14	0.984337
659	85	14			0.993533
660			71	14	0.984337
661			85	14	0.993533
662	71			14	0.984337
663	71		14	14	0.984337
664		85	14		0.993533
665	71		14		0.984337
671	14			85	0.993533
782	87	12			0.992554
786		12	87		0.992554
788	87			12	0.992554
793		12	87		0.992554
795	87	12			0.992554
819		11	88		0.923564
820	88		11		0.923564
822		11	88		0.923564
823		88	11		0.923564
825	88		11		0.923564
827		11		88	0.923564
828	88	11			0.923564
829			88	11	0.923564
834		88	11		0.923564
835	88			11	0.923564
836		11	88		0.923564
838		11		88	0.923564
839		88		11	0.923564
841	11			88	0.923564
883	80	20			0.999996
886			80	20	0.999996
887		20	80		0.999996
890	20		70		0.999998
893		10		90	0.90298
1096		11	88		0.999937
1151	90		10		0.90298
1302	33		66		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain