SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5482

Length: 502 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene5482
ATGGGACACAGATCTGCCCTGGTCTCTGATACAAGTATCATGGCCGCCGAGAATGGCAAGAGGCAGCTTCATTTTCTGCTCTTCCCATGGCTGGCGCTAGGCCACATAAATCCATTCGTAGAGCTCTCCAAGGCTCTCGCCATGAATGGCCACACCGTTTCCTTCCTCTCTACTCCCCTTAACATTTCCAGAATCAAGAGTTCGTTAACGACCCAGGACTGGCCAGGCCGGATCGATCTATTGGAAATGCCCTTACCACCGACAGAGGGCCTGACTCCGGGCGCGGAATGCACCGCCGATATCCCGCAAGAAATGGCAGCTCCGCTCAAGATTGCCATGGACAGCATGGAGAAGCCGTTCCGAAGCCTTCTCGGGCAGATCTCACCGGACTATGTCGTCCACGACTTCTCGCAGTATTGGACGCAGAGCGTCGCTGCTGAGATGGGCGTTGCATCAGTCTTTTCATAGTCTACTCCTCGGCCACCTGCGCTCATGCCTTCCA

Ace file of the UniGene sp_v2.0_unigene5482

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glycosyltransferase-like protein [Arabidopsis thaliana] sp\|Q9LTA3.1\|U91C1_ARATH RecName: Full=UDP-glycosyltransferase 91C1 dbj\|BAA98157.1\| anthocyanidin-3-glucoside rhamnosyltransferase-like [Arabidopsis thaliana] dbj\|BAC41828.1\| putative anthocyanidi	-	-	8.0e-27	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	udp-glycosyltransferase-like protein	-	-	0.0	63%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	63%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	63%
Blast2go	N-Glycan biosynthesis	00510	63%
Blast2go	Mucin type O-Glycan biosynthesis	00512	63%
Blast2go	Various types of N-glycan biosynthesis	00513	63%
Blast2go	Other types of O-glycan biosynthesis	00514	63%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	63%
Blast2go	Glycosaminoglycan biosynthesis - keratan sulfate	00533	63%
Blast2go	Lipopolysaccharide biosynthesis	00540	63%
Blast2go	Peptidoglycan biosynthesis	00550	63%
Blast2go	Glycerolipid metabolism	00561	63%
Blast2go	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	63%
Blast2go	Sphingolipid metabolism	00600	63%
Blast2go	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	63%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603	63%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	63%
Blast2go	Carotenoid biosynthesis	00906	63%
Blast2go	Zeatin biosynthesis	00908	63%
Blast2go	Flavonoid biosynthesis	00941	63%
Blast2go	Anthocyanin biosynthesis	00942	63%
Blast2go	Flavone and flavonol biosynthesis	00944	63%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	63%
Blast2go	Betalain biosynthesis	00965	63%
Blast2go	Biosynthesis of type II polyketide products	01057	63%
Blast2go	Metabolic pathways	01100	63%
Blast2go	Biosynthesis of secondary metabolites	01110	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	63%
Blast2go	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRU6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 321 aas, your sequence is shorter than subject: 156 - 476

Fln protein: MGHRSALVSDTSIMAAENGKRQLHFLLFPWLALGHINPFVELSKALAMNGHTVSFLSTPLNISRIKSSLTTQDWPGRIDLLEMPLPPTEGLTPGAECTADIPQEMAAPLKIAMDSMEKPFRSLLGQISPDYVVHDFSQYWTQSVAAEMGVASVFS*

Protein Length: 157

Fln nts: _-_ATGGGACACAGATCTGCCCTGGTCTCTGATACAAGTATCATGGCCGCCGAGAATGGCAAGAGGCAGCTTCATTTTCTGCTCTTCCCATGGCTGGCGCTAGGCCACATAAATCCATTCGTAGAGCTCTCCAAGGCTCTCGCCATGAATGGCCACACCGTTTCCTTCCTCTCTACTCCCCTTAACATTTCCAGAATCAAGAGTTCGTTAACGACCCAGGACTGGCCAGGCCGGATCGATCTATTGGAAATGCCCTTACCACCGACAGAGGGCCTGACTCCGGGCGCGGAATGCACCGCCGATATCCCGCAAGAAATGGCAGCTCCGCTCAAGATTGCCATGGACAGCATGGAGAAGCCGTTCCGAAGCCTTCTCGGGCAGATCTCACCGGACTATGTCGTCCACGACTTCTCGCAGTATTGGACGCAGAGCGTCGCTGCTGAGATGGGCGTTGCATCAGTCTTTTCATAGTCTACTCCTCGGCCACCTGCGCTCATGCCTTCCA

Fln Alignment:

Contig5482___IMAAENGKRQLHFLLFPWLALGHINPFVELSKALAMNGHTVSFLSTPLNISRIKSSLTTQDWPGRIDLLEMPLPPTEGLTPGAECTADIPQEMAAPLKIAMDSMEKPFRSLLGQISPDYVVHDFSQYWTQSVAAEMGVASVF
B8LRU6______________MMDGHNGKKKLHFLLFPWLAQGHINPFLELSKALAIHGHKVSFLSTPVNISRIRPSLQLQDWPGRIDLMELPLPPTEGLTPGAECTADIPTEMAFPLKVALDGIEKPFRSLLRQLSPDYLVHDFVQYWTQSAAAEMQVPAIY

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
117	25			75	0.996473
119		75	25		0.996473
120			75	25	0.996473
136		75	25		0.996473
169	20			80	0.995493
170	20	80			0.995493
173		40	20	40	1.0
174	80			20	0.995493
176			20	80	0.995493
180		80	20		0.995493
201	80	20			0.995493
254		80		20	0.995493
262	60		40		1.0
287	14		85		0.993533
288	14	85			0.993533
289	14		71	14	0.984337
291	85			14	0.993533
304		14		85	0.993533
305	85		14		0.993533
308		85		14	0.993533
311	14	85			0.993533
314		14	85		0.993533
321	14	85			0.993533
336	28			71	1.0
340		85	14		0.993533
376	20	80			0.995493
382	20		80		0.995493
383	80	20			0.995493
388	60		40		1.0
391		20	80		0.995493
421	75			25	0.996473
437	25	75			0.996473
456		33	66		0.997452
458	66		33		0.997452
459			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain