SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5475

Length: 2179 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene5475
ATGTCATGGCAGAGTTATGGGGAAGTGTGGTTGTTTCGGTGCTGTTTTGGGGTTTTGCCAATCAGATTACAACTGTTGATGAAGCTAAACAGTTTTATCCTCTTTTTGGATTGGGGGCAAATGTAGCCTTGGTCTTCTCTGGCCGTACTGTGAAATATTTTTCACATCTTAGGACAAACCTGGGACCAGGTGTGGATGGCTGGGCTGTATCACTCAGAGGTATGATGAGTCTGGTAGTTGGTTTGGGACTTATAATAGCTGGAATTTACTGGTGGACAAACAAATATGTGGTGAATGATCCAACACTACCAAAGGCAGAAGCAAGGAAAAAGAAAGAAAAACCCAAGCTGGGGATGGTTGAGAGTGCAAAGTTTTTGCTGAATTCGAGGTATGTGCGAGACCTGGCTACTCTTGTTGTAGCCTACGGAATAAGTATAAATCTGGTTGAAGTGACATGGAAGTCCAAACTGAAGGCTCAGTTTCCCAGTCCTAATGAGTACTCGGCATTTATGGGGGATTTCTCTACTTACACTGGAATTGTGACTTTCAGCATGATGCTTCTAAGCAGATATATATTCAGAAAATATGGATGGGGCGTTGCAGCTACCATCACTCCAACCGTGTTGCTTGTGACAGGAGCGGCATTCTTTGCATTGGTGCTAGGTAGTGATTCATTAACTCCATTGATGGCTAAGTTTGGAGTAACGCCATTGTTAGCGGCAGTCTACGTTGGAGCCATGCAGAATATCTTCAGCAAGAGTGCAAAGTACAGTTTGTTTGATCCTTGCAAAGAAATGGCTTACATTCCTCTTGATGAAGATACCAAGGTAAAGGGTAAAGCTGCAATAGATGTGGTCTGCAATCCACTCGGGAAATCAGGAGGTGCACTCATTCAGCAGGTACTCATATTGGGATTTGGATCGCTTGCCAATTCAACACCATATCTTGGAGTTATCCTACTGGCCACAGTCATATCTTGGTTGTATGCAGCACGCTCTCTTGATCGGCAGTTCACTCCCCTTGTAAAGAAGGATTTGAAGAGCAAGCTCTTGGAAGGAAAATTATCTGCTATGTCCAGAGCTGTGTCAGTAAATTTAAAGAAGAGACCGGAGGTAACATATAGATTCACAAGTAAACTCAATGAACAAGGTTTTATTGAAGGATGTTATGTCCCTGTGATGGTTGGTGGTACTTCCACGACACAATCAGATGGGAACTCTGTTGTGCTTTCAAGCCTTCCAACTGAGAAAATTGAGACTGCTAATCCTGATATACCAGGTAAAGCAGTGGTTCCACATACTGAATCATCAAATGATGCTGGGTTATATCCATCTGAACCTGATGCCGGGTTACTTTCATCTGAGTCTGCACCAGCAAATTGATCAAACATATTCTTACTTTCTTTCAATAACTTCAAGCTGTCTACTTGACAATGAAAGGTTCACACTGCATTTGTTCTTTGCAATACATTGTCATCCAAATCTGGAGAGCCAATTACCACAACCACTGGTCGTAAGTGTCCATCATCCTCCATTTGCATGGTAACCATATCAGTCAACTTATTAGGTTTTTGGTTCACAGTATGCTTGATAGGAAGGGAATACTTTTGCTGCTCAAGTTTCCAATGCCCTTACAAATTGCAGATGTTGACGAAAGCAGTAGCTCAAATTATTTTGTTTTCTGGTGCACTTTATCTTGATGTACATTAGGCTTGTTGAAGAAAGGTTTATTCAAAGCAACTGCAAATATAACTAAGAGTTTTAAGGAGGTACCTATAAAGCCATGCTACGACTTCCTAAGTATATGAGACAATTATTTGCAGAGTTTCGCATAGTTTGCATGTTTATATGCAAATCTCCTTTCCTTTATGTTGCAGAATACTTGATGGCACAAGCAATGGTTTCATGCACCCATTATAAGGTATATAGCATAGCGAAAGGATATGCATTTAGTTTCATATACTTTGCCCATCTTGACGAAAATCCACGTTCTTTTGAAAGCACTTCCATCATAACCATTCATGAAAATATTGACAATGAAAACAGCCAAGTAGCTGAATCAGCAGCTAAGGTTTGGCTTAACTCAGCCAAATGTGGATCAGTATTTGGCTTAAACAAAGATGTCAGTGAGACAAAGCCTATAAGCCCACCTAATTATGAAGAGAACATGAATTGTGCTG

Ace file of the UniGene sp_v2.0_unigene5475 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative plastidic ATP/ADP transporter [Oryza sativa Japonica Group] dbj\|BAD25005.1\| putative plastidic ATP/ADP transporter [Oryza sativa Japonica Group] dbj\|BAH01705.1\| unnamed protein product [Oryza sativa Japonica Group]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	plastidic atp adp transporter	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	86%
Blast2go	ATP:ADP antiporter activity	GO:0005471	Molecular Function	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	86%
Blast2go	integral to membrane	GO:0016021	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	ADP/ATP carrier protein	IPR004667	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACJ5

Fln msg: your sequence is longer than subject: 459 - 310

Fln protein: MAELWGSVVVSVLFWGFANQITTVDEAKQFYPLFGLGANVALVFSGRTVKYFSHLRTNLGPGVDGWAVSLRGMMSLVVGLGLIIAGIYWWTNKYVVNDPTLPKAEARKKKEKPKLGMVESAKFLLNSRYVRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSAFMGDFSTYTGIVTFSMMLLSRYIFRKYGWGVAATITPTVLLVTGAAFFALVLGSDSLTPLMAKFGVTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQVLILGFGSLANSTPYLGVILLATVISWLYAARSLDRQFTPLVKKDLKSKLLEGKLSAMSRAVSVNLKKRPEVTYRFTSKLNEQGFIEGCYVPVMVGGTSTTQSDGNSVVLSSLPTEKIETANPDIPGKAVVPHTESSNDAGLYPSEPDAGLLSSESAPAN*

Protein Length: 460

Fln nts: _-_ATGTCATGGCAGAGTTATGGGGAAGTGTGGTTGTTTCGGTGCTGTTTTGGGGTTTTGCCAATCAGATTACAACTGTTGATGAAGCTAAACAGTTTTATCCTCTTTTTGGATTGGGGGCAAATGTAGCCTTGGTCTTCTCTGGCCGTACTGTGAAATATTTTTCACATCTTAGGACAAACCTGGGACCAGGTGTGGATGGCTGGGCTGTATCACTCAGAGGTATGATGAGTCTGGTAGTTGGTTTGGGACTTATAATAGCTGGAATTTACTGGTGGACAAACAAATATGTGGTGAATGATCCAACACTACCAAAGGCAGAAGCAAGGAAAAAGAAAGAAAAACCCAAGCTGGGGATGGTTGAGAGTGCAAAGTTTTTGCTGAATTCGAGGTATGTGCGAGACCTGGCTACTCTTGTTGTAGCCTACGGAATAAGTATAAATCTGGTTGAAGTGACATGGAAGTCCAAACTGAAGGCTCAGTTTCCCAGTCCTAATGAGTACTCGGCATTTATGGGGGATTTCTCTACTTACACTGGAATTGTGACTTTCAGCATGATGCTTCTAAGCAGATATATATTCAGAAAATATGGATGGGGCGTTGCAGCTACCATCACTCCAACCGTGTTGCTTGTGACAGGAGCGGCATTCTTTGCATTGGTGCTAGGTAGTGATTCATTAACTCCATTGATGGCTAAGTTTGGAGTAACGCCATTGTTAGCGGCAGTCTACGTTGGAGCCATGCAGAATATCTTCAGCAAGAGTGCAAAGTACAGTTTGTTTGATCCTTGCAAAGAAATGGCTTACATTCCTCTTGATGAAGATACCAAGGTAAAGGGTAAAGCTGCAATAGATGTGGTCTGCAATCCACTCGGGAAATCAGGAGGTGCACTCATTCAGCAGGTACTCATATTGGGATTTGGATCGCTTGCCAATTCAACACCATATCTTGGAGTTATCCTACTGGCCACAGTCATATCTTGGTTGTATGCAGCACGCTCTCTTGATCGGCAGTTCACTCCCCTTGTAAAGAAGGATTTGAAGAGCAAGCTCTTGGAAGGAAAATTATCTGCTATGTCCAGAGCTGTGTCAGTAAATTTAAAGAAGAGACCGGAGGTAACATATAGATTCACAAGTAAACTCAATGAACAAGGTTTTATTGAAGGATGTTATGTCCCTGTGATGGTTGGTGGTACTTCCACGACACAATCAGATGGGAACTCTGTTGTGCTTTCAAGCCTTCCAACTGAGAAAATTGAGACTGCTAATCCTGATATACCAGGTAAAGCAGTGGTTCCACATACTGAATCATCAAATGATGCTGGGTTATATCCATCTGAACCTGATGCCGGGTTACTTTCATCTGAGTCTGCACCAGCAAATTGA___TCAAACATATTCTTACTTTCTTTCAATAACTTCAAGCTGTCTACTTGACAATGAAAGGTTCACACTGCATTTGTTCTTTGCAATACATTGTCATCCAAATCTGGAGAGCCAATTACCACAACCACTGGTCGTAAGTGTCCATCATCCTCCATTTGCATGGTAACCATATCAGTCAACTTATTAGGTTTTTGGTTCACAGTATGCTTGATAGGAAGGGAATACTTTTGCTGCTCAAGTTTCCAATGCCCTTACAAATTGCAGATGTTGACGAAAGCAGTAGCTCAAATTATTTTGTTTTCTGGTGCACTTTATCTTGATGTACATTAGGCTTGTTGAAGAAAGGTTTATTCAAAGCAACTGCAAATATAACTAAGAGTTTTAAGGAGGTACCTATAAAGCCATGCTACGACTTCCTAAGTATATGAGACAATTATTTGCAGAGTTTCGCATAGTTTGCATGTTTATATGCAAATCTCCTTTCCTTTATGTTGCAGAATACTTGATGGCACAAGCAATGGTTTCATGCACCCATTATAAGGTATATAGCATAGCGAAAGGATATGCATTTAGTTTCATATACTTTGCCCATCTTGACGAAAATCCACGTTCTTTTGAAAGCACTTCCATCATAACCATTCATGAAAATATTGACAATGAAAACAGCCAAGTAGCTGAATCAGCAGCTAAGGTTTGGCTTAACTCAGCCAAATGTGGATCAGTATTTGGCTTAAACAAAGATGTCAGTGAGACAAAGCCTATAAGCCCACCTAATTATGAAGAGAACATGAATTGTGCTG

Fln Alignment:

Contig5475___MVESAKFLLNSRYVRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSAFMGDFSTYTGIVTFSMMLLSRYIFRKYGWGVAATITPTVLLVTGAAFFALVLGSDSLTPLMAKFGVTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQVLILGFGSLANSTPYLGVILLATVISWLYAARSLDRQFTPLVKKDLKSKLLEGKLSAMSRAVSVNLKKRPEVTYRFTSKLNEQGFIEGCYVPVMVGGTSTTQSDGNSVVLSSLPTEKIETANPDIPGK
D5ACJ5______________MVESAKFLLNSRYVRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSAFMGDFSTYTGIVTFSMMLLSRYIFRKYGWGVAATITPTVLLVTGVAFFALVLGSDSLTPMMAKFGVTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAVDVVCNPLGKSGGALIQQVLILGFGSLANSTPYLGVILLATVISWLYAARSLDQQFTPLVKKDLKSKLLEGKLSAMSRAVSVNLKQRPEVTYRFVSILNEQGFIEGRYVPVMDGSTPMTQSDGNSVVLSSLSTETIETTNPDIPVK

SNPs (tot: 91)

Position	A %	C %	G %	T %	Probability
296		12		87	0.992554
377		12		87	0.992554
398	12			87	0.992554
399			87	12	0.992554
400		12	87		0.992554
402		12		87	0.992554
403	12			87	0.992554
405	87		12		0.992554
434	87	12			0.992554
435		12		87	0.992554
436		12		87	0.992554
451	85		14		0.993533
453	85		14		0.993533
456		85	14		0.993533
458		14		85	0.993533
459	14			85	0.993533
460	14			85	0.993533
461		85	14		0.993533
462			14	85	0.993533
466	85	14			0.993533
467		85	14		0.993533
468	57		42		1.0
469	85	14			0.993533
521	85		14		0.993533
522	14	85			0.993533
527			14	85	0.993533
528	14			85	0.993533
531		14		85	0.993533
535		85	14		0.993533
536	85		14		0.993533
539	14			85	0.993533
540		14	85		0.993533
541		85	14		0.993533
543	85	14			0.993533
544			14	85	0.993533
610	75			25	0.996473
611	75		25		0.996473
613	75		25		0.996473
614	75			25	0.996473
615		75	25		0.996473
616	25	75			0.996473
617		20		80	0.995493
619	80		20		0.995493
620		20		80	0.995493
624			20	80	0.995493
626		20	80		0.995493
632		20		80	0.995493
633	80		20		0.995493
774	16			83	0.994512
776	16			33	1.0
779	83		16		0.994512
780	83			16	0.994512
783	83	16			0.994512
786		33		66	1.0
788	83	16			0.994512
790			88	11	0.923564
791	87		12		0.992554
792	87			12	0.992554
793		12		87	0.992554
795		12		87	0.992554
797	12			87	0.992554
798		12		87	0.992554
799			12	87	0.992554
838			85	14	0.993533
840	11	88			0.923564
841	88		11		0.923564
843		88	11		0.923564
845		11	88		0.923564
846	11		88		0.923564
847			11	88	0.923564
848		11		88	0.923564
859		12		87	0.992554
860	87		12		0.992554
863		87	12		0.992554
898		14		85	0.993533
899		14	85		0.993533
901	16			83	0.994512
924	40	60			1.0
1036		25		75	0.996473
1037		25		75	0.996473
1038		25	75		0.996473
1039	25			75	0.996473
1162	83		16		0.994512
1244	20		80		0.995493
1245		20	80		0.995493
1246	20			80	0.995493
1247			80	20	0.995493
1295	66		33		0.997452
1324	16		83		0.994512
1327			83	16	0.994512
1328	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain