SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5458

Length: 1048 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5458

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proline transport protein-like n=2 Tax=Oryza sativa RepID=Q8L431_ORYSJ	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	proline transporter 2	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	proline transport	GO:0015824	Biological Process	67%
Blast2go	L-proline transmembrane transporter activity	GO:0015193	Molecular Function	67%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	67%
Blast2go	plasma membrane	GO:0005886	Cellular Component	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P182

Fln msg: your sequence is longer than subject: 329 - 247

Fln protein: LSWALQFVHFILCNMGFLLLSGKALKDIFMDHNRMVGLKLPEFIMISGVTYFIFAFSVPHLSAMGTWFGISAFLTFVYVAIAMIVSITDGNSRSKDYHVPGTEQQKVFNVLGAIAALVFANNSGMLPEIQATLKHPAIKNMRKALYLQYSVGMAIYYAVAIIGYWAYGSSVSDYILNDLSGPKWAKVLANTTAFLQTVVSQHIFCVPVHEALDTKFYRLDEHENSLYNLSTRFILRALFFAINTLCAAMFPFLGDFVTLVGSLSLIPLTFVFPSLVFLKVNRHSSSLWQKSWHTFTVVFFALVTLATTASALRLIITNAKTYRLFADA*

Protein Length: 330

Fln nts: ATTTATCGTGGGCTCTACAATTTGTTCATTTCATACTCTGCAACATGGGATTCCTCCTCCTTTCGGGAAAGGCTCTGAAGGACATCTTTATGGATCACAACAGGATGGTTGGGCTGAAACTTCCAGAATTCATTATGATTTCAGGAGTAACATATTTCATTTTCGCTTTCTCTGTGCCACATCTGTCAGCGATGGGAACATGGTTTGGAATTTCAGCATTCCTAACGTTTGTCTACGTTGCGATAGCAATGATAGTATCAATCACCGATGGCAATTCTAGGTCGAAGGACTACCATGTCCCTGGAACGGAACAGCAGAAGGTTTTCAATGTCTTGGGAGCAATCGCAGCCCTCGTCTTTGCGAATAACTCTGGCATGTTACCTGAAATTCAGGCTACACTGAAGCACCCAGCTATCAAAAACATGCGCAAAGCGCTTTACTTACAGTACTCCGTCGGGATGGCGATATACTACGCGGTGGCAATTATTGGATACTGGGCATATGGATCTTCTGTCTCAGATTATATCCTCAATGACCTAAGCGGGCCAAAGTGGGCGAAAGTTCTGGCAAACACAACTGCATTTTTGCAGACTGTTGTTTCACAACACATATTCTGTGTTCCTGTGCATGAGGCTCTGGACACCAAATTTTATCGCCTGGATGAACATGAAAATTCTTTATATAACCTTTCAACTCGATTCATCCTTCGTGCATTATTTTTTGCAATCAACACACTGTGTGCTGCCATGTTTCCTTTCCTAGGAGACTTTGTAACCCTGGTGGGCTCATTGTCGCTCATTCCATTAACATTTGTGTTTCCATCCCTAGTATTCCTGAAGGTGAATCGACATAGTAGCAGTCTCTGGCAGAAATCATGGCATACGTTCACTGTTGTTTTCTTTGCTCTTGTAACGTTGGCGACCACTGCATCAGCTCTTCGTTTGATAATAACGAACGCAAAAACGTACCGTTTATTTGCAGACGCTTGA___AAATATCAGCATTGCAGTGAATTTGGTTTTCTCCATCTTTTCTCTGTGATGAAGCAATC

Fln Alignment:

Contig5458___SWALQFVHFILCNMGFLLLSGKALKDIFMDHNRMVGLKLPEFIMISGVTYFIFAFSVPHLSAMGTWFGISAFLTFVYVAIAMIVSITDG-NSRSKDYHVPGTEQQKVFNVLGAIAALVFANNSGMLPEIQ
A9P182______________TWALQYINLFMSNVGYIILAGEAMKAIYTFYDNEGILKLPYCITITGIVCGIFALSIPHLSALRLWLGVSTLLSLIYIIVTIVLSIKDGFNNSSRDYEIPGSKTTKFFSSIGAAANIVFVYNSGMLPEIQ

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
535	16		83		0.994512
776		80		20	0.995493
777		80	20		0.995493
778		80	20		0.995493
779			20	80	0.995493
857	33		66		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain