SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5388

Length: 1869 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5388

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cation/calcium exchanger 3 [Arabidopsis thaliana] sp\|Q9LJI2.1\|CCX3_ARATH RecName: Full=Cation/calcium exchanger 3; Short=AtCCX3; AltName: Full=Protein CATION CALCIUM EXCHANGER 3; AltName: Full=Protein CATION EXCHANGER 9 dbj\|BAB02970.1\| Na/Ca,K-exchanger-l	-	-	42%
FL-Next	sp=Cation/calcium exchanger 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	43%
Blast2go	cation calcium exchanger 4	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	cellular cation homeostasis	GO:0030003	Biological Process	63%
Blast2go	sodium ion export	GO:0071436	Biological Process	63%
Blast2go	response to cation stress	GO:0043157	Biological Process	63%
Blast2go	manganese ion transmembrane transport	GO:0071421	Biological Process	63%
Blast2go	sodium ion transmembrane transporter activity	GO:0015081	Molecular Function	63%
Blast2go	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	63%
Blast2go	manganese ion transmembrane transporter activity	GO:0005384	Molecular Function	63%
Blast2go	cytoplasmic vesicle membrane	GO:0030659	Cellular Component	63%
Blast2go	mitochondrion	GO:0005739	Cellular Component	63%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	63%
Blast2go	potassium ion transmembrane transport	GO:0071805	Biological Process	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	0.0	-
Sma3	Sugar transporter, conserved site	IPR005829	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q9LJI2

Fln msg: Overlapping hits, possible frame ERROR between 741 and 488, STOP codon was not found. Distance to subject end: 6 aas, atg_distance in limit (1-15): atg_distance = 16, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 512 - 643

Fln protein: SSSTVHVKDGQLSGTQCWLCGLWHCYYMLGNTATEYFCYSLKMMCSLLKLHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVILIVGKINLLGALAFLSIYFIYVFIVVVKELLRMQEAQKFNLHSRRIIFASEKDGSIHSPLLDPVSGTGSKNDPEELQPPLPQWMWESNATIYADQTMEMTGEVPRPMWDWGDESEEGKASHSWCRILLFLLELPLLLPRRLTIPIVEETRWSRGFAIASAMLAPVLLAFLWNSQEIQPFGIGESAYVIAGILGLILGILAFFTTKAEHPPRTFLLPWAAGGFIMSIVWFYIIANELVALLVAFGTILDISPSLLALTVLSWGNSMGDLTSNIALASNSRDGVQIAMSGCYAGPMFNTLAGLGMSLVLGAWMNQPYFMIPKDASLFYTLGFLAAALIWALVVLPRNHMRPTKLLGIGLLIVYASFLLVRMGKYF

Protein Length: 513

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATCTAGATCACAAATATCGAATTATGCCAGTTCAGTCTTCACGGGTTTTCATATACTCTCAAGGTTTCTGAATGAAAATGCTTCAGAAGCAGGCCATCATCTGCCAGAAAGTCCCCTGGAAGACGGCCGTAGACTTGCTGCAAGCCGTTCAGAAGTAGAACAAGATAACCTCGTGGTGCCAGCGATGGAGGATGAAGACGATGCTCCTTGCAGAGTAGAGAAACGGCACTTGAATCGTGAGAACGAGTGTGAATATATCAAATCTCATCATGACCAGTGCACTTCTGGAGGATTTATCGAGTATATAGAGTTCTTCTACTGTGCATGTCAAGGATGGGCAATTATCAGGTACACAGTGCTGGTTGTGTGGCTTGTGGCATTGTTACTATATGCTGGGGAATACAGCGACAGAGTATTTTTGCTATTCTTTGAAGATGATGTGTAGTCTGTTGAAGCTGCATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTATTTTGATTGTTGGTAAGATCAATCTGTTAGGAGCACTGGCCTTCTTGTCGATATATTTCATATATGTATTCATTGTTGTGGTGAAGGAGTTATTGAGGATGCAGGAGGCCCAGAAATTCAATTTACATTCCCGAAGAATCATTTTTGCTTCAGAAAAAGATGGTTCCATTCATAGCCCTCTTTTGGATCCAGTGTCAGGTACAGGCTCGAAGAATGATCCAGAGGAGTTGCAGCCTCCCTTGCCACAATGGATGTGGGAATCTAATGCTACCATCTATGCAGATCAGACAATGGAGATGACAGGGGAGGTTCCTAGGCCTATGTGGGATTGGGGTGATGAAAGTGAGGAAGGTAAGGCGAGTCATTCATGGTGTAGAATTTTATTGTTCCTTTTGGAATTGCCATTGCTGTTACCGCGTAGGTTGACCATTCCTATAGTTGAAGAGACTCGTTGGTCCAGGGGGTTTGCAATTGCAAGTGCTATGTTAGCACCAGTTCTCCTGGCTTTCCTGTGGAATTCTCAGGAAATCCAGCCTTTCGGCATTGGCGAAAGTGCATATGTTATTGCAGGGATTTTGGGTTTGATATTAGGAATTCTTGCTTTCTTCACAACGAAGGCAGAGCACCCACCTCGCACATTTCTGCTCCCTTGGGCTGCAGGAGGGTTTATCATGAGCATTGTGTGGTTTTACATAATTGCTAATGAGCTGGTGGCTCTCTTGGTTGCCTTCGGTACAATCCTTGACATATCCCCATCGCTTCTAGCTCTAACAGTGTTGTCTTGGGGGAATTCCATGGGCGATTTGACATCAAATATTGCACTGGCATCGAACAGTCGTGATGGAGTGCAGATTGCCATGTCTGGTTGCTATGCAGGGCCGATGTTCAATACACTCGCTGGATTGGGAATGTCCTTGGTGTTAGGGGCCTGGATGAACCAGCCTTACTTCATGATTCCAAAGGATGCTAGTCTTTTCTACACGTTAGGCTTCCTTGCTGCTGCACTTATCTGGGCACTGGTTGTTTTGCCGAGGAATCATATGCGCCCAACCAAGTTATTGGGAATAGGCCTTTTGATAGTGTATGCATCATTTCTCCTTGTCAGGATGGGCAAATATTTTGG

Fln Alignment:

Contig5388___WLCGLWHCYYMLGNTATEYFCYSLKMMCSLLKLHPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxS*PWLSLCVILIVGKINLLGALAFLSXXXXXXXXXXXKELLRMQEAQKFNLHSRRIIFASEKDGSIHSPLLD-------PVSGTGSKNDPEELQPPLPQWMWESNATIYADQTMEMT-GEVPRPMWDWGDESEEGKASHSWCXXXXXXXXXXXXXXXXXXXXXVEETRWSRGFAIASAMLAPVLLAFLWNSQE---IQPFGIGESAYVXXXXXXXXXXXXXFFTTKAEHPPRTFLLPWAAGGFIMSIVWFYIIANELVALLVAFGTILDISPSLLALTVLSWGNSMGDLTSNIALASNSRDGVQIAMSGCYAGPMFNTLAGLGMSLVLGAWMNQP-YFMIPKDASLFYTLGFXXXXXXXXXXXXPRNHMRPTKLLGIGLLIVYASFLLVRM
Q9LJI2______________WLVAL---FYLLGNTAADYFCCSLEKLSKLLRLPPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx----VSLLVILMVGRVTVRIAIAFVSIYVVYAFLVAANVILR-KHAKRFKLEALTPLLPMQ--GSVFSPSVGEDMPMNTPLIETETEDGPPRLQS-LPQWMWASNVAIYSNHFAKVSVHDEDRPPWGWIDDTAEVESSS--CTKFTSLLEIPLTIPRRLTIPSVEEDTWSKTYAVASVSLAPVLLASLWSSQDDVSLQACGV---AYFFSVVIGSTLGFLAYKNTEPDHPPRRFLIPWVLGGFIMSIVWFYMIANELVALLVTFGEIYGINPSILALTVLAWGNSMGDLVSNIALTMNGGDGVQIALSGCYAGPMFNTLVGLGMSMLFGAWSKSPDTYMLPEDKSLFYTLGFLVLGLVWAMVILPRNDMQPSRTLGVGLIAIYLIFVTFRL

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
78	75		25		0.996473
79			25	75	0.996473
80	75		25		0.996473
183			80	20	0.995493
184	80		20		0.995493
185	80		20		0.995493
186		80	20		0.995493
223	83		16		0.994512
345		12		87	0.992554
346			87	12	0.992554
349		87	12		0.992554
350	87	12			0.992554
356	87	12			0.992554
357			87	12	0.992554
358		12	87		0.992554
490	90	10			0.90298
521	10		90		0.90298
650	25	75			0.996473
652		25	75		0.996473
653	25			75	0.996473
654	25	75			0.996473
822		50	50		1.0
858	83		16		0.994512
906	80			20	0.995493
1087		12		87	0.992554
1543			86	4	0.999642
1600	86	4		8	0.999539

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain