SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5374

Length: 1873 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5374

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	boron transporter [Citrus macrophylla]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	anion exchanger family protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	anion transport	GO:0006820	Biological Process	82%
Blast2go	inorganic anion exchanger activity	GO:0005452	Molecular Function	82%
Blast2go	integral to membrane	GO:0016021	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bicarbonate transporter, eukaryotic	IPR003020	-	0.0	-
Sma3	Bicarbonate transporter, C-terminal	IPR011531	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRN9

Fln msg: your sequence is shorter than subject: 481 - 671

Fln protein: MGYAPGSNVPSAIPRRLATPNPWSHGAYSNWTVFKEMLDVPLLYIFGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTILCGLVGIPPSNGVIPQSPMHTKSLATLKHQLVRSKLVTTVRKSMQKNSTLGQLYGNMQEAYEQMQTPLVYQPPPALALKELKETTIQLAASTGHMDAPVDESIFNVDKDVDDLLPVEVKEQRLSNLLQSLMVVGCLAAMPIIRKIPTSVLWGYFAFMAIESLPGNQFWERILFLFTAPSRRYKVLQDYHATFLETVPFKTIATFTIFQTCYLLACFGITWVPIAGVLFPLLIMLLVPARQYILPKFFKGAHLQELDAAEYEEAPGMPCNITEAGIQGFELGSMGTGANDGEVLDEMITRSRGEVKHTYSPRITSSSDCTPIHESKSALSPRIVEAKQIYSPRISELRQTHSPHRGEKHSGIPLVSQGKNTSPSASGLRPHKPTSN*

Protein Length: 482

Fln nts: ATGGGATATGCACCAGGAAGCAATGTACCAAGTGCAATTCCTAGACGTCTTGCTACTCCTAATCCATGGTCACATGGTGCTTATTCCAACTGGACAGTTTTTAAGGAAATGCTTGATGTGCCATTGTTATACATTTTTGGAGCTTTCATTCCGGCGACAATGATTGCAGTGCTTTATTATTTTGATCACAGCGTTGCATCCCAACTTGCCCAACAAAAGGAATTCAACTTAAGAAAACCTTCTTCATACCATTATGACTTACTTCTCTTAGGATTTTTGACTATTTTATGTGGTCTTGTTGGCATACCTCCTTCAAACGGTGTTATTCCTCAATCTCCGATGCACACGAAAAGTTTAGCTACTCTCAAACATCAGTTGGTGCGTAGCAAGTTAGTGACAACAGTCCGGAAAAGTATGCAGAAAAATTCAACCTTAGGGCAATTATACGGAAACATGCAAGAAGCCTATGAGCAAATGCAGACCCCACTGGTTTATCAGCCTCCACCTGCCTTGGCACTTAAGGAATTGAAAGAGACCACAATTCAGTTGGCCGCAAGTACTGGGCATATGGATGCCCCAGTTGATGAATCAATTTTTAATGTTGACAAGGACGTGGATGACCTGCTTCCTGTTGAGGTGAAAGAACAGCGATTGAGTAATTTGTTGCAATCTCTGATGGTGGTTGGCTGCCTTGCAGCAATGCCCATCATTAGAAAGATCCCAACTTCTGTGCTTTGGGGTTATTTTGCTTTCATGGCCATAGAGAGTTTGCCAGGAAATCAATTTTGGGAAAGGATATTGTTTCTTTTCACTGCTCCAAGCCGTAGATACAAAGTACTTCAGGATTATCATGCTACATTTCTTGAAACGGTGCCTTTCAAGACAATTGCCACTTTCACCATTTTCCAGACATGTTATTTGCTGGCATGTTTTGGTATCACATGGGTGCCTATAGCTGGTGTTCTCTTCCCACTACTGATCATGTTGTTAGTCCCAGCGAGGCAGTATATCCTTCCCAAGTTTTTCAAAGGAGCACATCTTCAAGAATTGGATGCAGCAGAGTATGAAGAAGCCCCTGGAATGCCATGCAATATAACAGAAGCTGGAATTCAGGGATTCGAACTAGGAAGCATGGGGACAGGTGCAAATGATGGCGAAGTTTTGGATGAGATGATTACACGAAGTCGCGGTGAGGTCAAACACACATATAGTCCACGGATAACTAGCTCGAGTGATTGCACACCAATTCATGAATCCAAGTCTGCATTAAGTCCCCGAATTGTAGAAGCTAAACAAATATATAGCCCCCGTATAAGTGAGCTCAGACAGACACATAGCCCTCACAGAGGGGAAAAGCATTCGGGCATTCCCCTGGTTAGTCAAGGAAAAAATACGAGTCCAAGTGCATCTGGTTTGAGGCCACATAAACCAACTTCCAATTAG___GTGTTTGGAGTCTAAATCCTTGGCCAGTAATCTTTCCCTTCAGTGAGCATATCTTATGTTGAATAGTACATATTTTGTTGGCTTATCTTTATTTAATCATTGTGCCATAAATCACTCAGTTGTATTTGGTGTGTCTTCACAAAGAACCCCTGTCCATCTCAGACGAGAGGGTAGACCATATAGTGCGTGTAAAACAATGTAATGGAAGTCGAGCTTGAAGTATTTCAGTTTTCTTGTAGCATGAAATCTATTATGTCAGTCTTGTGGTTCTGTAGACCCTGGGCATGCCAAATAAGCATGGTGTATTAAAGGGTCCTGTGAGTGGTTTGAGCTTCATACAAAGTCATCCTTCTTCTACCAGCTGGATCTTAACCACAAAGTTTGCAGCCTTTAATGTTTCATTGAAATAAAAAAATGTGGAAATTAAACT

Fln Alignment:

Contig5374___MGYAPGSNVPSAIPRRLATPNPWSHGAYSNWTVFKEMLDVPLLYIFGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDXXXXXXXXXXXXXVGIPPSNGVIPQSPMHTKSLATLKHQLVRSKLVTTVRKSMQKNSTLGQLYGNMQEAYEQMQTPLVYQPPPALALKELKETTIQLAASTGHMDAPVDESIFNVDKDVDDLLPVEVKEQRLSNLLQSLMVVGCLAAMPIIRKIPTSVLWGYFAFMAIESLPGNQFWERILFLFTAPSRRYKVLQDYHATFLETVPFKTIATFTIFQTCYLLACFGITWVPIAGVLFPLLIMLLVPARQYILPKFFKGAHLQELDAAEYEEAPGMPCNITEAGIQGFE---------------LGSMGTGANDGEVLDEMITRSRGEVK
B8LRN9______________VSYSASDKVPTGVPRRLFSPNPWAPGASSNWTIIRDMLNVPPMYILAALIPAIMIAGLYFFDHSVASQMAQQKDFNLKNPSAYHYDMLLLGFMVLLCGLLGLPPSNGVLPQSPMHTKSLAVLKRQMIRKKMVESAKKSIEEQASTLEIYGNMQEVFVKMEQ----KGPTSKDLNELKDLKAIVLRSK---EDEKDGNAFDPEKHIEACLPVRVKEQRLSNLMQSLLVGGSVGLMPVIKKIPTSVLWGYFAYMAIESLPGNQFWERLLLLFIAPTRRYKVLEDLHASFVETVPFKTIALFTIFQFIYLLSCFGVTWIPIAGILFPIPFFLLIPIRQYILPKIFESKYMSELDAAEYEESAAFPRRDLSLSIRELDTPRTPRTPRTPRINRVDSIKEIIGDAEILDELTTRSRGELK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1184	83		16		0.994512
1282			25	75	0.996473
1326	75		25		0.996473
1586	66	33			0.997452
1687		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain