SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5370

Length: 1796 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5370

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	myb family transcription factor [Arabidopsis thaliana] gb\|AAF05867.1\|AC011698_18 transfactor-like [Arabidopsis thaliana] gb\|AEE74029.1\| myb family transcription factor [Arabidopsis thaliana]	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	protein	-	-	59%

Source	InterPros	Term	Type	Identity
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3		IPR014778	-	-
Sma3	Peptidase M22, glycoprotease, conserved site	IPR017860	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPV3

Fln msg: your sequence is longer than subject: 468 - 392

Fln protein: MNSFVPNFNSQPENRNPTSKLIPQTEKMYQVKKPTMESHSERPVMLQEINVPTETGLVLSTDPKPRLRWTAELHERFVDAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSHLQKYRLGKQPHKEVNVDTSRDGLSHGGPVAGYGSTACRVPEVQVACNSVPSIIPANMTDTLQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKARETLAGYNVGSIGLEATRAELSELASKVKNECFNSTFSALTFSTMPEIPGLFPESQIAHQQSQAADCSAYSCLTSNESSEKSPTENLQAGGRKRPRSAYDNKVQFWQDEIREDIRLQELTGEENLSSPSSRTKDSSIVFHHHERANSDIVQAEENGNRLSDKKGKECEMNGVLVDPPITRTLAFSSALSLQENSQMYETSKVYTNQDKTRSKGYNKFSNMTQDLDLNSNGDTTVSSKDRGLDLNGFGWSR*

Protein Length: 469

Fln nts: CAGTTAACAAAGACTTTCGCAAAAGTAAACAATACCCGATTCATGCTTGACTTGATTCAGCGCTATATATGTCCATGTCCTGTGTACAATATGTCTTTGAGCAAGCAAGTCCCCGAGGATATTTGCTCTGATTGATGAGTTCTGAAGC_-_ATGAATAGCTTTGTTCCCAATTTTAATTCCCAACCTGAGAACCGAAATCCCACATCAAAATTAATTCCCCAGACAGAGAAAATGTATCAGGTGAAGAAGCCCACCATGGAATCTCACTCAGAGAGGCCTGTTATGTTACAGGAAATCAATGTTCCAACTGAAACAGGGCTAGTTTTGTCAACAGACCCAAAGCCTCGATTGAGGTGGACTGCAGAGCTTCATGAGAGATTCGTAGACGCTGTGACTAAGCTTGGAGGTCCAGATAAGGCGACGCCCAAGGCTGTGAGGACCCGCATGGGGGTCGAAGGCCTTACTCTTTATCACCTAAAGAGCCATCTTCAGAAATACAGGCTTGGCAAGCAGCCTCACAAGGAAGTTAATGTGGACACTAGTCGGGATGGATTGTCTCATGGAGGACCTGTTGCAGGATATGGGTCAACAGCTTGCAGGGTTCCTGAGGTTCAAGTTGCATGCAATTCTGTTCCTAGCATCATCCCAGCAAATATGACAGACACCTTACAAATCACAGAAGCTCTGAGGATGCAAATGGAGGTACAGAGAAGATTGCACGAACAGCTGGAGGTTCAAAGACACTTGCAACTTCGTATAGAAGCACAGGGAAAGTACTTGCAGTCAATTCTAGAAAAAGCAAGGGAAACTCTTGCAGGTTACAACGTGGGGTCAATTGGATTGGAAGCTACTCGTGCAGAACTTTCTGAATTGGCCTCAAAAGTGAAAAATGAATGTTTTAATTCTACATTTTCTGCTTTGACCTTCTCCACGATGCCTGAAATCCCTGGTCTATTTCCAGAATCTCAGATTGCCCATCAGCAATCCCAGGCAGCAGACTGTTCTGCATATAGCTGCCTCACTTCAAATGAGAGTTCTGAGAAGAGTCCTACAGAGAATTTGCAGGCTGGTGGTAGAAAGCGCCCAAGGTCTGCTTATGATAACAAAGTGCAGTTTTGGCAGGATGAAATCAGAGAAGACATCAGGCTGCAAGAACTGACAGGAGAAGAAAATCTTTCTTCACCTTCCTCTAGGACCAAGGATTCGTCAATTGTATTTCATCATCATGAGAGGGCTAATAGTGACATAGTACAAGCAGAAGAAAATGGCAACCGTTTATCTGACAAAAAAGGAAAAGAGTGTGAAATGAATGGAGTGCTTGTTGATCCACCCATAACAAGAACATTGGCCTTTTCTAGTGCTTTATCTCTGCAAGAAAATAGTCAAATGTATGAGACTTCCAAAGTTTATACGAATCAAGATAAAACACGTTCCAAAGGGTATAACAAATTCTCTAATATGACACAGGATTTGGACTTGAATTCCAACGGTGATACCACAGTGTCCTCCAAGGATAGAGGGCTTGATTTGAATGGTTTTGGGTGGAGCAGATGA___GCATTGTTTTGCAACGTGTCTGTGTCTTTGGCACATATGAGGAAGCCATAACTGCTTTTATGCATGAGATTCAGAGCCAATAACCATTGTATTATGGCTTTTATACATTGCGTGGACCTGAGAAGGCCTTGTAATCTTTTTCCCTTAAGTTTTAAACCTGATTGAGTCCTTTTCTGGCAGACCAGTAGGACAGGTACCATTCTGTAGATGTACTATGATGTAAATATTGCAATTATATGATCTT

Fln Alignment:

Contig5370___MYQVKKPTMESHSERPVM-------LQEINVPTETGLVLSTDPKPRLRWTAELHERFVDAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSHLQKYRLGKQPHKEVNVDTSRDGLSHGGPVAGYGSTACRVPEVQVACNSVPSIIPANMTDTLQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKARETLAGYNVGSIGLEATRAELSELASKVKNECFNSTFSALTFSTMPEIPGLFPESQIAHQQSQAADCSAYSCLTSNESSEKSPTENLQAGGRKRPRSAY-DNKVQFWQDEIREDIRLQELTGE-----ENLSSPSSRTKDSSIVFHHHERANSD
C0PPV3______________MYQVNNSSMSSLEKPPSFEETQSGPLEGTNLPGDACLVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRAMGVKGLTLYHLKSHLQKYRLGKQPFKEFSDQSNKDASCL---TEGQGASTC----------SSSKMINQDVNESFQITEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKACQALTDQTIASAGLEAARQELSELAMKVSNGCLSSPFEDVNLPSLPEIPQIHVDESTLHQQTQLTDCSVDSCLTSNESTPKIPQEDMQAVRNKRSRPLYCDNDALVWDNDVRNDLRLQELSAACLSQVGNLNEEEQMPSVSPIESHSERNSMKD

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
323		33		33	0.997753
726		16		83	0.994512
770	80	20			0.995493
772			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain