SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5351

Length: 452 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene5351
CGTCGTGACCTTGGCTGTCACTCAATTTTTCATTTTATATCCTTCGAATCCGTCATTCGTCTGAATCATCAGACAAACCCTCGCAGATCTGCTCAGTTCTGAAGCATAAACCTCCGCCAAATCCATGCCTTGAATTTCCTGAAAAAATTCGTGGCTATTCAGTGTCGAACTGCTATCTCCACAGTCAGATCCAGTGGCGATCGAGGTGAATTAGGGCAGAAGAAGGTGAGATCGTGTACAAATGGCTGCCATTAAATCCACGTCTCGATCCGCGTCGGTGGCGTTTGCCCCCGACGCGCCCCTGTTGGCAGCGGGTACGATGGCCGGAGCCATCGACTTGTCATTCAGTTCCTTAGCCAACTTAGAGATCTTCAAGTTGGATTTCCAGTCCGACGATCCGGAGCTCCCCGTCGTCGGAGAATGCCCAAGCAACGAACGATTGAATCGGCTTT

Ace file of the UniGene sp_v2.0_unigene5351

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein transport protein SEC31 [Arabidopsis thaliana] gb\|AAM20553.1\| putative protein [Arabidopsis thaliana] gb\|AAP37794.1\| At3g63460 [Arabidopsis thaliana] gb\|AEE80486.1\| protein transport protein SEC31 [Arabidopsis thaliana]	-	-	4.0e-23	78%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	80%
Blast2go	protein transport protein sec31	-	-	5.79639e-27	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	5.79639e-27	84%
Blast2go	endomembrane system	GO:0012505	Cellular Component	5.79639e-27	84%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	5.79639e-27	84%
Blast2go	membrane	GO:0016020	Cellular Component	5.79639e-27	84%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9GF23

Fln msg: Distance to subject end: 1033 aas, your sequence is shorter than subject: 70 - 1103

Fln protein: MAAIKSTSRSASVAFAPDAPLLAAGTMAGAIDLSFSSLANLEIFKLDFQSDDPELPVVGECPSNERLNRL

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTCATTTTATATCCTTCGAATCCGTCATTCGTCTGAATCATCAGACAAACCCTCGCAGATCTGCTCAGTTCTGAAGCATAAACCTCCGCCAAATCCATGCCTTGAATTTCCTGAAAAAATTCGTGGCTATTCAGTGTCGAACTGCTATCTCCACAGTCAGATCCAGTGGCGATCGAGGTGAATTAGGGCAGAAGAAGGTGAGATCGTGTACAA_-_ATGGCTGCCATTAAATCCACGTCTCGATCCGCGTCGGTGGCGTTTGCCCCCGACGCGCCCCTGTTGGCAGCGGGTACGATGGCCGGAGCCATCGACTTGTCATTCAGTTCCTTAGCCAACTTAGAGATCTTCAAGTTGGATTTCCAGTCCGACGATCCGGAGCTCCCCGTCGTCGGAGAATGCCCAAGCAACGAACGATTGAATCGGCTTT

Fln Alignment:

Contig5351___MAAIKSTSRSASVAFAPDAPLLAAGTMAGAIDLSFSSLANLEIFKLDFQSDDPELPVVGECPSNERLNRL
B9GF23______________MAAIKSVNRSASVALAPDSPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSEDHDLPVVGECQSSERFNRL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
401	42		57		1.0
412	20			80	0.995493
414			80	20	0.995493
418		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain