SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5350

Length: 1600 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5350

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	57%
Blast2go	dnaj heat shock n-terminal domain-containing protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	71%
Blast2go	response to stress	GO:0006950	Biological Process	71%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	71%
Blast2go	vacuole	GO:0005773	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A5C448

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 408 - 542

Fln protein: M*ISAEEKTAAMAALDAGLYSESARHFSKIMDGRRGTPQGFIAECYMLRATAYQAAGRVTDSIADCNRTLALDPTCIEALTTRASLFETARCFSESLQDLEHVRLLYETILRQQKFPGPVWKHQNLNYRDVHGNLQILNSKILTMKQRLTSPYTVDYYTLIGLKRGCTRADVERAHMLLCLRHTPDKASQFVDRCEFVDERDIDTVKYQARMSTLMLYKLLQKAYTYIMTSIMEEEAEKQKKLRANEVKQEEPDGQVDRVQCLQVRGEPSVDIKVEINPSDYCPESEASNIRATSSGPDINVVNGELQQFFLATSSATDWTLMNTTSRESHVPRMSDTSEFSIYTSTKEDSRLQEMADTSVFQAVSCRDSVAVGTMLSRGFPSDRWMNAHQGHAIRPLPVTYEALSC*

Protein Length: 409

Fln nts: AATGTAAATTTCTGCTGAGGAGAAAACAGCTGCTATGGCTGCACTAGATGCTGGTCTCTACTCAGAGTCAGCAAGGCATTTCTCAAAAATTATGGATGGAAGAAGAGGCACCCCTCAAGGCTTCATAGCAGAATGCTATATGTTGAGAGCAACAGCTTATCAAGCGGCAGGAAGAGTGACTGATTCAATAGCTGATTGCAATAGGACACTTGCATTAGATCCTACTTGCATTGAAGCCTTAACCACACGTGCCTCCCTGTTTGAAACTGCAAGATGCTTCTCTGAGAGCTTGCAGGATCTGGAACATGTAAGACTACTTTATGAGACCATTCTTCGCCAGCAGAAATTTCCAGGACCTGTTTGGAAGCATCAAAATCTGAATTACAGGGATGTCCATGGAAATCTTCAGATTTTGAATTCTAAGATTCTTACTATGAAGCAGAGGTTAACAAGTCCTTATACAGTTGATTATTATACTCTTATTGGTTTGAAAAGAGGTTGCACAAGGGCAGACGTTGAGCGTGCACATATGTTACTTTGCCTGAGGCATACGCCTGATAAAGCTTCTCAATTTGTTGATCGCTGCGAGTTTGTGGATGAAAGAGATATTGATACTGTTAAATATCAGGCTCGTATGTCAACTTTGATGCTGTATAAATTGTTACAGAAGGCCTATACATATATAATGACTTCTATCATGGAAGAAGAAGCTGAGAAGCAAAAGAAGCTAAGAGCCAATGAAGTAAAACAGGAAGAACCTGATGGACAGGTTGATAGAGTGCAGTGTCTTCAAGTTAGAGGTGAACCTTCTGTTGATATAAAAGTCGAGATCAATCCATCAGATTACTGTCCTGAGAGTGAAGCAAGTAACATCAGGGCCACATCTTCAGGTCCTGACATTAACGTTGTTAATGGTGAGCTTCAACAGTTTTTCTTGGCAACAAGTTCTGCGACTGATTGGACATTGATGAATACTACTTCTAGGGAATCTCATGTTCCTAGGATGAGTGACACATCTGAGTTTAGCATATACACTTCTACTAAGGAAGATTCAAGGTTGCAAGAGATGGCAGATACTTCTGTATTTCAAGCAGTATCATGTAGAGATTCAGTGGCTGTTGGGACAATGCTATCACGTGGATTTCCTTCAGATCGTTGGATGAATGCACATCAAGGACATGCCATAAGGCCCCTTCCAGTCACTTATGAAGCACTTAGTTGTTAA___GGTGGTGCAGTAAGTTAATACCATACACTATATGACTGGTGATCCATTTAAAAGGTCTTCCGATAATATGTAGACTACTGACAGAAGGAGATGCCACAGACTAAGGGTGTAATTACAAAAGCTTTATCTTGTACAAGAGTTGTCTTTTACAGCAATAAATATCTGGCATTTCTTCTGAGGGAGACAACAGCTTTCACGTGATCCCTAAGCAACAGCAGTGGACCAGCAATACAACGGTGGTGACTGTGATCATAGAAGAGGAAACTACTCTATCAAAGCATTCTGTTGCAGGAAACCACCTTTTGGGCGAAAGAACTCAGCTGCAATTTGATTGAAGCGTTGAGGGCATCTGATACATTCAATGGACAATACATT

Fln Alignment:

Contig5350___KTAAMAALDAGLYSESARHFSKIMDGRRGTPQGFIAECYMLRATAYQAAGRVTDSIADCNRTLALDPTCIEALTTRASLFETARCFSESLQDLEHVRLLYETILRQQKFPGPVWKHQNLNYRDVHGNLQILNSKILTMKQRLTSPYT--VDYYTLIGLKRGCTRADVERAHMLLCLRHTPDKASQFVDRCEFVDERDIDTVKYQARMSTLMLYKLLQKAYTYIMTSIMEEE-AEKQKKLRANEVKQEEPDGQVDRVQCLQVRGEPSVDIKVEINPSDYCPESEAS
A5C448______________KTAALAALDAGLYSEAIRHFSKILDGRRGAPQGFLSECFMHRATAYRSAGRIAESIADCNRTLALDPTCIQALSTRASLLESIRCLPDCLHDLEHLKLLYNSILRDRKLPGPAWKRHNVQYREIPGKLCALSTKIQELKQRVVSGETGNVDYYALIGLRRGCSRSELERAHLLLCLRHKPDKATNFVERCEFSDDRDLDSVKDRAKMSALLLYRLLQKGYSSVMATIMDEEAAEKQRKKAAAAL-------QATAIQAQQTQEQPKKESELE-NQATAAPQQQTS

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
239	14			85	0.993533
240		14		85	0.993533
242	85			14	0.993533
243		85		14	0.993533
251	16		83		0.994512
309			14	85	0.993533
310	85	14			0.993533
313	85			14	0.993533
317		83	16		0.994512
505	83		16		0.994512
511	33		66		1.0
514			66	33	1.0
515	66			33	1.0
604	80			20	0.995493
606	80			20	0.995493
612	20			80	0.995493
613		20	80		0.995493
616	80			20	0.995493
669			75	25	0.996473
670	75			25	0.996473
691	66			33	0.997452
1128		20	80		0.995493
1132	83			16	0.994512
1261		14		85	0.993533
1264			87	12	0.992554
1265	85		14		0.993533
1291	28	71			1.0
1326	85		14		0.993533
1345	85		14		0.993533
1419	87		12		0.992554
1421		75		25	1.0
1585	66		33		0.997452
1587	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain