SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5333

Length: 942 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5333

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative small nuclear ribonucleoprotein D1 [Brassica napus]	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	small nuclear ribonucleoprotein sm d1	-	-	98%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	98%
Blast2go	nucleolus	GO:0005730	Cellular Component	98%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	98%
Blast2go	small nucleolar ribonucleoprotein complex	GO:0005732	Cellular Component	98%

Source	InterPros	Term	Type	e value	Identity
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	0.0	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	0.0	-

Full-Lengther Next Prediction

SSRs (tot: 1)

Start position	End position	Sequence	Length
433	450	TGGACG TGGACG TGGACG	18

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain