SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5331

Length: 1146 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5331

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA splicing protein mrs2, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9S826_RICCO	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	magnesium transporter	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	magnesium ion transport	GO:0015693	Biological Process	65%
Blast2go	magnesium ion transmembrane transporter activity	GO:0015095	Molecular Function	65%
Blast2go	plasma membrane	GO:0005886	Cellular Component	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	0.0	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQP2

Fln msg: Distance to subject end: 73 aas, your sequence is shorter than subject: 381 - 494

Fln protein: GGLRSWLVIEATGNAELLEVGKHVIMRRAGLPARDLRILDPLLSYPSTILGRERAIVINLEHIKAIITSDEVLLLNSKDPVVAPFADDLQRRLPVGCCMPPQRESGTSDADMETTNNANLKTHPFPRESELTNVNGRGLPETLVFPRSNLPTISDKKGEVLKSELTCSVNGNGPKILPFEFRALEACLEAACSCLETETITLEKEAYPALDELTTKISTLNLERVRQIKSRLVAISGRVQKVRDELEHLLDDDEDMAEMYLTEKLIQQQLDEASSLHSFDGTREVEHEKVESDAEDESDEALPSAMHLLARDDNRNCSNIQTASQCSNHSGSKNFDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQN

Protein Length: 382

Fln nts: CGGGGGATTGAGGTCATGGCTGGTGATAGAGGCCACAGGGAATGCCGAGCTGCTCGAGGTCGGCAAACATGTAATCATGCGACGCGCAGGACTTCCTGCTCGTGATTTACGCATTCTTGATCCCTTGCTTTCCTATCCTTCTACAATTCTCGGGCGGGAGCGCGCCATTGTCATAAATCTAGAGCATATAAAGGCCATTATTACTTCAGACGAAGTTTTGTTGCTCAATTCAAAGGATCCTGTCGTCGCTCCCTTCGCAGATGACCTTCAGCGCCGGTTGCCTGTCGGCTGTTGCATGCCGCCGCAACGGGAAAGTGGAACAAGTGATGCTGATATGGAAACAACCAACAATGCTAATCTAAAAACACATCCATTTCCCAGAGAATCAGAATTAACAAATGTGAATGGTAGAGGCCTTCCGGAGACCCTTGTATTTCCAAGAAGTAACCTCCCGACGATTTCTGATAAAAAAGGGGAAGTTCTGAAGTCAGAATTGACTTGCTCTGTAAATGGAAATGGTCCAAAGATTTTACCATTTGAGTTTAGAGCATTGGAAGCTTGCCTTGAAGCGGCATGCAGCTGCCTGGAGACAGAGACAATTACGCTGGAGAAAGAGGCGTATCCAGCCTTGGATGAGTTGACGACAAAGATTAGCACACTTAATCTTGAAAGAGTCAGGCAAATAAAGAGCCGATTGGTTGCAATATCAGGACGTGTCCAAAAGGTAAGGGATGAACTAGAGCACTTGCTTGATGATGATGAAGATATGGCCGAGATGTATTTAACAGAGAAGCTAATTCAGCAACAGCTAGATGAAGCTTCTTCTCTTCATTCCTTTGACGGGACAAGAGAAGTAGAGCATGAGAAAGTTGAGTCTGATGCAGAAGATGAAAGTGATGAAGCCCTTCCCAGTGCCATGCATCTTCTTGCTAGAGATGATAACAGGAACTGCAGCAATATCCAAACTGCCAGCCAATGTAGCAACCACAGTGGTTCTAAGAATTTTGATGTAGAAGAACTGGAGATGCTTCTAGAGGCTTACTTTGTGCAGATTGACGGTACACTGAACAAGCTGTCAACTTTAAGGGAGTATGTTGATGATACAGAGGATTACATCAACATCATGCTAGATGACAAACAAAATCA

Fln Alignment:

Contig5331___GLRSWLVIEATGNAELLEVGKHVIMRRAGLPARDLRILDPLLSYPSTILGRERAIVINLEHIKAIITSDEVLLLNSKDPVVAPFADDLQRRLPVGCCMPPQRESGTSDADMETTNNANLKTHPFPRESEL-TNVNGRGLPETLVFPRSNLPTISDKKGEVLKSELTCSVNGNGPKILPFEFRXXXXXXXXXXXXXXTETITLEKEAYPALDELTTKISTLNLERVRQIKSRLVAISGRVQKVRXXXXXXXXXXXXMAEMYLTEKLIQQQLDEASSLHSFDGTR---EVEHEKVXXXXXXXXXXXXXXXMHLLARDDNR----------NCSNIQTASQCSNHSGSKNFDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQN
B8LQP2______________GVRAWLLLDASGQAQVVEAGKHAIMRRTGLPARDLRILDPLLSYPFTILGRERAIVINLEHIKAIITAQEVLLLNSRDPAVVPFIADLQRRLNV----PTQQEGRNSDTDADVANKDILRTSPSGMMPTLSSSMNNGELQQLKKFRENVFLEKPDTWGDGSKPDM--NAYENGPKVLPFEFRALEACLEAACSCLESETTILEEEAYPALDELTSKISTLNLERVRQIKSRLVAISGRVQKVRDELEHLLDDDEDMAEMYLTDKLRQHYLDGNASPSSFYGGRDGMEYEPTQSDAEEERSLLERHTDPQNLLSSSGNHVEGPLAATKAPSRNEYSSSSSGSHSGTKSLDVEELEMLLEAYFVQIDSTLNKLSALREYVDDTEDYINIMLDDKQN

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
239	14	85			0.993533
240	14	85			0.993533
283		14		85	0.993533
291	28		71		1.0
309	16		83		0.994512
356	83			16	0.994512
357	83	16			0.994512
358			16	83	0.994512
363	60		40		1.0
421	25		75		0.996473
449		80		20	0.995493
456		80	20		0.995493
578	85		14		0.993533
701	10		90		0.90298
815	10		90		0.90298
816	90	10			0.90298
818			90	10	0.90298
819		90		10	0.90298
865		11	88		0.923564
867	88			11	0.923564
868	88			11	0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
751	762	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain