SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5305

Length: 569 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene5305
CGTCGTGACCTTGGCTGTCACTCAACTTTTGTCACCACCATATTTCCCCGCACCACCAGGGGAGCAAGCAAGCCAGTTCACGCTGAAAAATATAGCACCCCAAAAAAATCTGGCCATTCTTAACATTTGGGTCTTCAATCATGTCATGGTATGAGCATGTTGGTAGAACTGTTTGTTTGATAGTATGCAAGAACCACCAAGTATGGGAATGGATTCTGAAGCAACTGCGATCCAGCAGACAACCGGATTTCGTCTTTGAAGACTTAACTCGTCATACCCACTACTCAGCTTGGCACAACTTCCACAATGTGATATGTGGGGCAGCTGGAGAAATGGACAAGTATTTGGAAATCGTTAGGAAATCAAAGTGCAAAGTAATGATTATTCATGGAAAACAGGATGGAGTGGTTCCTTTAACGTGCAGCTTAGCAATTAAGTGCAAGATTGGTCAAGCAAAGCTGAATTTAGTGGAGAATGCTGATCACACCAACATCATTTTGGGCGTAAGAAAAGAGTTGCAGAGGAATTGGAGGAATTCGGGCATCATGCAGATGTGTCAGTAATGGAAT

Ace file of the UniGene sp_v2.0_unigene5305

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] gb\|AAB63611.1\| unknown protein [Arabidopsis thaliana] emb\|CAB51657.1\| putative protein [Arabidopsis thaliana] emb\|CAB81332.1\| putative protein [Arabidopsis thaliana] gb\|AAL91257.1\| AT4g24140	-	-	1.0e-39	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	alpha beta fold family protein	-	-	0.0	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-
Sma3	Ribosomal protein S7	IPR000235	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLA4

Fln msg: Overlapping hits, possible frame ERROR between 136 and 99, your sequence is shorter than subject: 188 - 476

Fln protein: VVTLAVTQLLSPPYFPAPPGEQASQFTLKNIAxxxxxxxxxxxxxxIMSWYEHVGRTVCLIVCKNHQVWEWILKQLRSSRQPDFVFEDLTRHTHYSAWHNFHNVICGAAGEMDKYLEIVRKSKCKVMIIHGKQDGVVPLTCSLAIKCKIGQAKLNLVENADHTNIILGVRKELQRNWRNSGIMQMCQ*

Protein Length: 189

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTTGTCACCACCATATTTCCCCGCACCACCAGGGGAGCAAGCAAGCCAGTTCACGCTGAAAAATATAGCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATCATGTCATGGTATGAGCATGTTGGTAGAACTGTTTGTTTGATAGTATGCAAGAACCACCAAGTATGGGAATGGATTCTGAAGCAACTGCGATCCAGCAGACAACCGGATTTCGTCTTTGAAGACTTAACTCGTCATACCCACTACTCAGCTTGGCACAACTTCCACAATGTGATATGTGGGGCAGCTGGAGAAATGGACAAGTATTTGGAAATCGTTAGGAAATCAAAGTGCAAAGTAATGATTATTCATGGAAAACAGGATGGAGTGGTTCCTTTAACGTGCAGCTTAGCAATTAAGTGCAAGATTGGTCAAGCAAAGCTGAATTTAGTGGAGAATGCTGATCACACCAACATCATTTTGGGCGTAAGAAAAGAGTTGCAGAGGAATTGGAGGAATTCGGGCATCATGCAGATGTGTCAGTAATGGAAT

Fln Alignment:

Contig5305___LLSPPYFPAPPGEQASQFTLKNIAPQKNLAxxxxxxxLTFGSSIMSWYEHVGRTVCLIVCKNHQVWEWILKQLRSSRQPDFVFEDLTRHTHYSAWHNFHNVICGAAGEMDKYLEIVRKSKCKVMIIHGKQDGVVPLTCSLAIKCKIGQAKLNLVENADHTNIILG----VRKELQRNW
B8LLA4______________LLSPPYFPVPSGEQASQFTLKNIAPRK---xxxxxxxLTFGSSVMSWYEHVGRTVCLIVCRNHQVWEWILKQLRSSRKPNFLLEDLTRHTHYSAWHNFHNVICGAAGEMDKYLEIVRESKCKVMIMHGKQDGVVPSTCSLAIKRKIGQAKLNLVENANHTNIILGREEIVAKQLEEFW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain