SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5299

Length: 1431 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene5299 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phytoene synthase [Salicornia europaea]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	phytoene synthase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phytoene synthase.	EC:2.5.1.32	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Carotenoid biosynthesis	00906	88%
Blast2go	Biosynthesis of terpenoids and steroids	01062	88%
Blast2go	Biosynthesis of plant hormones	01070	88%
Blast2go	Metabolic pathways	01100	88%
Blast2go	Biosynthesis of secondary metabolites	01110	88%

Source	GOs	Term	Type	Identity
Blast2go	carotenoid biosynthetic process	GO:0016117	Biological Process	88%
Blast2go	geranylgeranyl-diphosphate geranylgeranyltransferase activity	GO:0016767	Molecular Function	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Squalene/phytoene synthase	IPR002060	-	0.0	-
Sma3	Terpenoid synthase	IPR008949	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKL8

Fln msg: your sequence is shorter than subject: 393 - 418

Fln protein: RRDLGCHASLMCSPANAVKQIVKCRAPPDMSEAMPMSMGGLVMNPLPKPMLPSEQKVYDVVLKQAAMVNDVNQRKGIAVLDVKPEIASPSTIELLNEAYERCGEVCAEYAKTFHLGTLLMTPDRRKAIWAIYVWCRRTDELVDGPNASHITPLALDRWEQRLEDLFHGRPYDMLDAALSDTVLKYPVDIQPFRDMIEGMRMDLTKSCYKNFNELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYNAALALGIANQLTNILRDVGEDARRGRIYLPQDELAQFGLSDEDIFAGKVTDRWRAFMKDQIKRARVFFDEAEKGVTELDKASRWPVWASLILYRQILDAIEANDYDNFTKRAFVGKAKKFLSLPIAYTQAFMRPVVTSKLSRAS*

Protein Length: 394

Fln nts: CGTCGTGACCTTGGCTGTCACGCATCTCTTATGTGTTCGCCTGCCAATGCTGTCAAGCAAATTGTGAAGTGCAGAGCTCCTCCGGACATGTCAGAGGCAATGCCCATGTCCATGGGGGGCCTTGTGATGAATCCTCTGCCAAAACCCATGTTGCCTTCTGAGCAGAAGGTGTACGATGTTGTGCTGAAGCAGGCTGCCATGGTGAATGATGTTAACCAGCGAAAGGGGATTGCTGTGTTGGATGTGAAGCCTGAGATTGCTTCTCCTTCTACCATTGAGTTGTTGAACGAGGCCTATGAACGCTGTGGTGAAGTTTGTGCTGAATATGCCAAGACTTTTCATTTGGGAACATTGTTGATGACCCCGGACCGAAGGAAGGCTATCTGGGCAATATATGTATGGTGCAGGAGAACTGATGAGCTTGTGGATGGTCCTAATGCCTCCCATATAACACCTCTAGCACTTGATCGATGGGAGCAAAGGCTAGAGGATCTCTTTCATGGGCGTCCATATGATATGCTAGATGCAGCTTTATCAGACACAGTTTTAAAATATCCAGTTGATATTCAACCCTTCCGAGATATGATTGAGGGCATGCGAATGGATCTTACAAAATCATGTTACAAAAATTTCAATGAGCTTTACCTTTACTGCTACTATGTTGCTGGGACAGTGGGCTTGATGAGTGTTCCTGTAATGGGAATAGCTCCAGAGTCAAAAGCAACAACAGAAAGTGTTTATAATGCTGCTTTAGCTTTGGGCATTGCAAATCAGCTAACCAATATACTGAGAGATGTTGGAGAAGATGCTCGCCGGGGAAGGATATATCTACCTCAAGATGAACTTGCACAGTTTGGACTATCAGATGAAGATATTTTTGCTGGGAAGGTGACTGACAGATGGAGAGCTTTTATGAAGGACCAGATAAAAAGGGCAAGGGTGTTTTTTGATGAAGCAGAGAAAGGTGTCACCGAGCTTGATAAAGCCAGTAGATGGCCGGTATGGGCTTCATTAATCCTTTACCGCCAGATATTAGATGCAATTGAAGCAAATGATTACGATAACTTCACCAAGCGAGCATTCGTTGGGAAAGCGAAGAAGTTTCTTTCATTGCCCATTGCTTATACACAAGCTTTCATGCGACCTGTAGTGACGTCTAAGCTTTCTCGAGCCTCATAA___GTCTATGCAATAGGAGCCCTTGGGTAAAAATAGTTGAACTACAATGTACATTTCACCCATAACCAAGAGGCAAATGCTCAGCCTGTTCTTAGAGATGCAGTTCATGGAAGGAACCAATTCTCTTCATCATTGAACTTTATTGACAGCATCTGAGTCCTGCTATTAAATAGTGGAAGGACATTACTCTCTATGAGCTTCTTCTCTATGCCATTCTCCCATTGCTTAATGCATTGTAGCATTTAAGCATTATAA

Fln Alignment:

Contig5299___RRDLGCH----ASLMCSPANAVKQIVKCRAPPDMSEAMPMSMGGLVMNPLPKPMLPSEQKVYDVVLKQAAMVNDVNQRKGIAVLDVKPEIASPSTIELLNEAYERCGEVCAEYAKTFHLGTLLMTPDRRKAIWAIYVWCRRTDELVDGPNASHITPLALDRWEQRLEDLFHGRPYDMLDAALSDTVLKYPVDIQPFRDMIEGMRMDLTKSCYKNFNELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYNAALALGIANQLTNILRDVGEDARRGRIYLPQDELAQFGLSDEDIFAGKVTDRWRAFMKDQIKRARVFFDEAEKGVTELDKASRWPVWASLILYRQILDAIEANDYDNFTKRAFVGKAKKFLSLPIAYTQAFMRPVVTSKLSRAS
B8LKL8______________QRDFKVHRPFGVSFICSHANAVKQIVKCRGAPGMSEAMPTSVGGLVMNPLGKPMLPSEQKVYDVVLKQAAMVNDVKQQKGINVLDVKPEIVSPSTIELLNEAYERCGEVCAEYAKTFYLGTLLMTPDRRKAIWAIYVWCRRTDELVDGPNASHITPLALDRWEQRLEDLFLGRPYDMLDAALSDTVLKYPVDIQPFRDMIEGMRMDLRKSRYKNFNELYLYCYYVAGTVGLMSVPIMGIAPESKATTESVYNAALALGIANQLTNILRDVGEDACRGRIYLPQDELAQFGLSDEDIFAGKVTDRWRAFMKDQIKRARMFFDEAEKGVTELDKASRWPVWASLILYRQILDAIEANDYDNFTKRAFVGKVKKFLSLPIAYTQAFVQPVVTSKFARAS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1164	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain