SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5283

Length: 1788 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5283

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Abscisic acid receptor PYR1 n=1 Tax=Fragaria x ananassa RepID=F2YHU9_FRAAN	-	-	58%
FL-Next	sp=Abscisic acid receptor PYR1; Arabidopsis thaliana (Mouse-ear cress).	-	-	56%
Blast2go	abscisic acid receptor pyl2-like	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Bet v I domain	IPR000916	-	-
Sma3	Pyrokinin, conserved site	IPR001484	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Zinc finger, C6HC-type	IPR002867	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Streptomyces cyclase/dehydrase	IPR005031	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O49686

Fln msg:

Fln protein: MKEGSGGPIPSGLSEDECMRLRDVIWRYHKHETLADQCSSMVVQRINAPVNVVWSVVRRFDKPQTYKHFIRSCSMHGDVKVGSIREVSVVSGLPASTSTERLEILDEESHIISFSVLGGEHRLKNYCSVTTLNEFVNDDRRWTTVLESYVVDVPEGNTKEDTCMFADTVVRCNLQSLAQLSEHLAQRQQV*

Protein Length: 192

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGGGGGTGTGTGAAGCCTTGTTGGGACTGAGCAGGGCAGGCAGGATCTTTTAGGAGGTATCCCAATCCAATTTACCTGATTTGATGTGGGTAATGGCGATTTTGGGATCATCCCATTACAGAAAACGCCGCGATCTTGTCACCCATCTCTCTGGATTAATGGTCATATAAACTCGTCGTGACCTTGGCTGTCACTCAATTACTATTAATATCATTGCAATTCCTACAAGCGGAAGACAGGACGAGGAGACGAGGGGACGCCATTGAGGCGCTCCATCTCCTTTCACTGGGGAGGTGGATTGGCCGATCATTGACATCCAAAATCGAAATTTAAATTCTGCCCTTTCCTTCTTTATTTCCCAAACCTCATACACCAATTTTTTCTTCATATCATTAGATCACACTGCAAAACTGATTCTGCTCAGATTTCAGAATTCGTTTTTATGTCATATTTTAGTTCCCCAAATCATCCAAATGCTTTGGAATCTAATACATAGAAAAGCCAGTGCATTTTTCCTTTTGTTTTCTCCATCATCCCAAGCATGCAGATTGCAGCAGTATTTAGTATTCTCTTTTAATCACTTGGATGTGATAGTTCACATTGCCTAAACGATTGCACAAGGATTGAGAGTTGCACTAATGTTTTGAGCTGTGTGTGTAAATATCTTCTTCAAATATAGACTATAGATTGCAGGGGGTGGGAAAG_-_ATGAAGGAGGGCAGTGGAGGGCCTATTCCGTCTGGCCTGAGTGAGGACGAATGCATGCGTCTCAGAGACGTTATATGGCGCTATCACAAGCATGAAACTCTCGCTGATCAATGCTCGTCCATGGTAGTCCAGCGTATCAATGCCCCTGTGAACGTTGTATGGTCTGTTGTGCGCAGATTCGATAAGCCTCAGACCTACAAGCATTTTATTCGCAGCTGCTCTATGCATGGAGATGTCAAGGTGGGCAGCATAAGGGAAGTCAGTGTGGTTTCTGGGCTTCCTGCCAGTACCAGTACTGAGCGTTTGGAGATCCTGGACGAGGAGAGCCATATCATCAGTTTCAGCGTCTTGGGTGGAGAGCACAGGCTCAAGAACTATTGCTCTGTCACTACATTGAACGAGTTTGTCAACGATGACAGACGTTGGACCACGGTGTTGGAGTCCTATGTTGTGGATGTACCAGAAGGCAACACCAAAGAGGATACCTGCATGTTTGCAGACACTGTTGTGAGATGCAATCTGCAATCTTTGGCTCAGTTGTCTGAGCATCTTGCTCAAAGGCAACAAGTTTAA___TAAGGCACCTCACCAATTTTGATTTTGAGCTTTCCAAGCTGTGGCCTCAAATGCAACTCGATGCTTATTAGGAATTGACATTGACCCCATAGTTTGGAAGGTCTCACTGGCCATGATCAATCAATCTGCAGAGGCTGCTTGCAATATGTTTTTCCAGAGATAAAATGTTCATATGGAATTTATGGCTGGACATTCAACCTTGAATTTATGCAAAAAGGTTACCAGGCATATGTATACAGTACTGCAAGTGTCGTACAAATATTGTTTATTTGTTTCTAGTGCAGTTCCCTTAATGGCTACTCTTCACTCTACTTGAAGGGCAGTTTAGCAAGGAAAAAAATTAGTCTGACATTTACATACTTTGATGTAAAACATTCCAATGTAAACTGCAAATCACATCTCCAAAGTGGTTTTTAGATTTGCCTCGAAGTTTACCATATCTAAACTTAATAAAGTCTCTTTCACCCGTTATATTCTCAACATAC

Fln Alignment:

Contig5283___IPSGLSEDECMRLRDVIWRYHKHETLADQCSSMVVQRINAPVNVVWSVVRRFDKPQTYKHFIRSCSMHG--DVKVGSIREVSVVSGLPASTSTERLEILDEESHIISFSVLGGEHRLKNYCSVTTLNEFVNDDRRWTTVLESYVVDVPEGNTKEDTCMFADTVVRCNLQSLAQLSEHLAQ
O49686______________MPSELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMAR

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
826	75		25		0.996473
829	75			25	0.996473
830	75		25		0.996473
833		25		75	0.996473
834		75		25	0.996473
836		75	25		0.996473
847	25		75		0.996473
927	75			25	1.0
929	12	75		12	0.975346
931	75		12		0.975346
933	87			12	0.992554
934	87		12		0.992554
935			75	12	0.975346
938		12		87	0.992554
940		12		87	0.992554
941	12			87	0.992554
1028		12		87	0.992554
1104	85		14		0.999981
1105	85			14	0.999981
1111	85	14			0.999981
1116			14	85	0.999981
1300	80		20		1.0
1301	80			20	1.0
1302		21	78		1.0
1303			23	76	1.0
1305			23	76	1.0
1307	76	23			1.0
1308		23		76	1.0
1309	76			23	1.0
1310	76			23	1.0
1315		69		23	1.0
1316		69	23		1.0
1407		5	92	1	0.99999
1410		94	5		0.999997
1412		94	5		0.999997
1416			93	6	0.999998
1418		93	6		0.999998
1427	93	6			0.999998

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain