SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5278

Length: 1640 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene5278 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	golgin candidate 2 [Arabidopsis thaliana] sp\|B0F9L7.1\|GOGC2_ARATH RecName: Full=Golgin candidate 2; Short=AtGC2 gb\|ABY67250.1\| putative golgin-84-like protein [Arabidopsis thaliana] gb\|AEE29685.1\| golgin candidate 2 [Arabidopsis thaliana]	-	-	1.0e-07	29%
FL-Next	sp=Golgin candidate 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	29%
Blast2go	golgin candidate 2-like	-	-	8.73703e-16	48%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: B0F9L7

Fln msg: Distance to subject end: 163 aas, your sequence is shorter than subject: 504 - 668

Fln protein: MAGWISSKLQVAQSLLEQIDQQAAESLGKQDKPRSSELDIGFGKPNGIPHLQDQFNKKSQETPELLNKSHIKNIRGEKHSRTRHLHGLKKSTSSSIASQPEATIQEALGRSLPKVAKPLPVLGNDDWTELLASPELTSRGSSLGNSDNAGNGNVAGKTPFLAGKDVYKNGVSITGISASVASKHVPPNSYDSKLSRSARHSDGLSSSISLDSNKFVRQDNNSESDSRCKADGYRIQNETPATRGESFSIIKRTDEPEIVSSSNSSTHGSGSDPSISEGLTKAQDGVENTDRNGYKGLQAIENVERHDECFIISGSNISPSHVKEDSLVRAQLEPFHESTFESHVKDTDTISVTLKGTGRHGQNGGQYEVQESQMINVNSEKCDSEQERGDSYKTSLEKSKKETAYIPRDGVHGKERSIFAADVSELQVVDMKKCSKEGQERAKVELDDVHGSSSESDKRSDMDTDSTSGSDSEDAEVERREQLQRKKWEEQMAAEAAAVEAAKA

Protein Length: 505

Fln nts: ACTGCCCACAACACACAGTTTTACGCACTGAAAATACTCAAATCGAACCCGGTTCAAGGGTTTTCACAAAAGTCTAGTTGGAGAATCGAAAGATGGAAGGCTGAGCATCCTGGATCTGCTTCACAAAA_-_ATGGCTGGTTGGATTTCTTCAAAGCTTCAGGTGGCCCAGAGTTTACTTGAGCAGATTGACCAGCAAGCTGCGGAATCGCTTGGAAAGCAAGACAAACCTCGATCCAGTGAACTCGACATCGGCTTTGGCAAGCCGAATGGAATTCCTCATTTGCAAGATCAATTCAATAAGAAGTCACAGGAGACCCCTGAACTTTTGAATAAATCGCACATAAAAAATATTCGTGGTGAAAAGCATTCACGGACACGACATCTCCATGGCCTTAAGAAATCCACTTCAAGTTCAATTGCCTCACAGCCTGAGGCAACAATCCAAGAGGCACTTGGGAGATCGTTGCCTAAGGTTGCTAAGCCGTTGCCGGTCCTGGGAAATGATGACTGGACAGAGCTTTTAGCTTCCCCTGAGCTAACTAGTCGTGGAAGCAGTTTGGGAAACTCTGATAATGCTGGAAATGGCAATGTTGCAGGTAAGACTCCTTTCTTGGCAGGTAAAGATGTATACAAAAACGGGGTTTCAATTACCGGAATATCAGCATCTGTTGCTTCTAAGCATGTTCCACCCAATTCATATGATTCAAAGCTTTCACGGAGTGCTCGTCATTCAGATGGCTTGTCATCGTCAATATCTCTTGATTCAAACAAATTTGTGAGACAAGATAATAACTCAGAGTCTGATTCTAGATGCAAAGCAGATGGATACAGAATCCAGAATGAGACACCTGCTACAAGAGGTGAATCCTTCAGTATCATTAAGCGTACCGACGAACCAGAAATCGTTTCCAGTAGTAACTCTTCCACTCATGGGAGCGGATCTGATCCATCTATATCAGAAGGTTTAACAAAGGCTCAAGATGGGGTAGAAAACACAGACAGAAATGGTTACAAAGGGCTGCAGGCAATTGAAAATGTTGAGCGGCATGATGAATGCTTCATTATTTCTGGCAGTAATATTTCTCCTTCACATGTAAAGGAAGACAGCTTAGTAAGAGCCCAGTTGGAACCTTTTCACGAATCCACATTCGAGTCTCACGTTAAAGATACAGATACAATATCAGTGACTTTAAAAGGCACTGGTCGCCATGGTCAAAATGGAGGACAATATGAAGTTCAGGAATCACAAATGATTAATGTTAACTCGGAAAAATGTGACAGTGAGCAGGAAAGGGGAGACTCCTACAAAACATCTCTCGAGAAATCTAAGAAAGAAACTGCTTACATACCAAGGGATGGCGTACATGGTAAAGAAAGAAGTATATTTGCTGCTGATGTTTCAGAGTTGCAGGTTGTGGACATGAAAAAATGCTCCAAGGAAGGCCAAGAAAGAGCCAAAGTTGAATTAGATGATGTCCATGGCAGTTCATCAGAAAGTGATAAAAGGTCAGACATGGATACAGATTCAACTTCAGGATCTGATTCAGAGGATGCTGAAGTGGAGAGGCGTGAACAGTTACAGAGGAAAAAGtGGGAGGAACAAATGGCTGCAGAGGCAGCAGCTGTTGAAGCCGCTAAAGCT

Fln Alignment:

Contig5278___MAGWISSKLQVAQSLLEQIDQQAAESLGKQDKPRSSELDIGFGKPNGIP--HLQDQFNKKSQETPELLNKSHIKNIRGEKHSRTRHLHGLKKSTSSSIASQPEATIQEALGRSLPKVAKPLPVLGNDDWTELLASPE---LTSRGSSLGNS--------DNAGNGNVAGKTPFLA
B0F9L7______________MANWISSKLKAAETILQQLDQQAADSLRKDEKSETHDEVFETSPKSGSSPVSLKDQLRKKTYEGSDSGSGSQ----RNSTEQKPSYLSSSKKVRKPDQSHERTSAPSQSLTQDNTK-------LTDNDWTELLSTPNQRTSTSTSRSPGGTSAIRGLKKDGKRHGNL-GKNPLVS

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1154	33		66		1.0
1376	87	12			0.992554
1377	12			87	0.992554
1378			12	87	0.992554
1382	16			83	0.994512
1383			16	83	0.994512
1386			83	16	0.994512
1388	16			83	0.994512
1389		16		83	0.994512
1391	16	83			0.994512
1393	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain