SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5221

Length: 834 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5221

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] dbj\|BAB10177.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAS99656.1\| At5g62150 [Arabidopsis thaliana] gb\|AAT41795.1\| At5g62150 [Arabidopsis thaliana] gb\|AED97570.1\| pepti	-	-	5.0e-11	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	protein	-	-	0.0	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell wall macromolecule catabolic process	GO:0016998	Biological Process	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
523	20		80		0.999999
533		11		88	0.992527
534		88		11	0.992527
543	88		11		0.992527
565	11		88		0.992527
567	88		11		0.992527
568		75	25		1.0
576		12	87		0.993502
581		14	85		0.994477
642		20	80		0.996423
681		20		80	0.996423
716		55		44	1.0
759		57		42	1.0
776		57		42	1.0
783		57	42		1.0
794			42	57	1.0
804	16		83		0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain