SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5188

Length: 1535 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene5188 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SF79_RICCO	-	-	4.0e-08	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	atp binding	-	-	6.08377e-09	45%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8U8

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 274 - 106

Fln protein: MLLPAEKGDTLKVLDHEKTPENDGESLGDSQAVSLRGDIIKRGPIIAEHVHAQGGDHKSSSDKQLYQPHLERKLSGSSSFNRINITQSTDCLYRQSNLAGNPDNLRERSKAPIVHQKGRFKIMHGDMVPGETLPQPMTIPLSSSSSSTSVAVSSVLPFMQRIAQHNATQRDQLVNLIKSLSQAKTSSVHELRILGSKSSIDAGVEISMSEASSERERELLQYMAELQARASNLVDEIQKLKMKNIQLERQLNTTGNADDKQTRITCNWTETQE*

Protein Length: 275

Fln nts: CAGTTTCTTTGCAACTCCAGCCTATTAATGTGCTCAACGGACATGCTGATGCGTTTGAGGGTGACATCAGTTCTTTTACTACACCTAATAAGGAGAGTATTGAGGAACACAGTCTA_-_ATGTTATTACCAGCAGAGAAGGGTGACACTTTGAAGGTCCTGGATCATGAGAAAACTCCTGAAAATGATGGTGAATCTTTAGGGGACAGTCAGGCTGTTTCTCTACGAGGTGATATAATCAAGAGAGGACCAATCATAGCTGAACATGTGCATGCTCAAGGTGGAGACCATAAAAGCAGCAGTGACAAGCAACTGTATCAGCCTCATCTAGAGCGAAAGTTAAGTGGATCTTCATCATTTAACAGGATTAATATTACACAGTCTACTGATTGCCTTTACAGGCAATCAAATTTAGCAGGCAACCCAGATAATTTGAGAGAAAGGTCAAAGGCACCTATTGTACATCAAAAGGGGCGTTTCAAAATTATGCACGGGGATATGGTTCCAGGGGAGACCTTGCCTCAGCCAATGACTATTCCTTTGTCATCTTCAAGTTCTTCGACAAGTGTTGCAGTGTCTTCAGTACTTCCGTTCATGCAAAGAATTGCACAACATAATGCTACACAAAGGGATCAACTTGTCAACTTAATTAAGTCTCTGAGCCAGGCCAAAACTTCTTCAGTTCATGAGCTGCGTATTCTGGGTTCTAAATCCTCCATTGACGCCGGTGTTGAAATTTCAATGTCGGAAGCGTCATCTGAGAGGGAGCGGGAGCTGTTACAATACATGGCTGAATTGCAAGCCAGGGCCTCAAATCTTGTAGATGAGATACAAAAATTGAAGATGAAAAATATCCAGTTAGAACGACAATTGAATACCACTGGGAACGCAGATGATAAGCAGACCAGAATAACTTGCAATTGGACTGAGACTCAAGAGTAAATTCAGTGTATGCGGCTACATTTCAGAGTACCAAAGAGCTTTTGGTATAAGTCTTAATCTTTGATCCTTCCACCACATTCTTTAGTTTGGGATCTGTATCGGCAGAAAAGTCCCCCTGGTTTCTCTGATCCAAAATATTCTTTGAGACTTTGTGTCCCCCATTTGAAATTCGGAGGATTTCAATGATTCAACCTATCCTTGGAAACTTTTTGTAAGTATTTGAGTTGAACCCTCAAGTTACCAATCAATGCTTCAGCCATACTTAAGACCCTCATGGCAAAGTATAATTTTGTCCACTATTGAGATTTCCGGGATCTTTTATGGCTTTGTTCTACATTAGAATCTTTTGGTCCAGTAGCAATGGTTGGCTGCAGATCACTAAATTCTCAAGCATTGAGCAATGTAAATGTTGATGTGTTGGCGACACTCAGTCCAAATGTGTGCCTTCCACTTATTAGGTGCTCGGGTTCTAGCATATCTTAGAGGAAATATACTTGCAACTTTCAGCCAGCCAGTGGAGTGACTGTTTTGATTCAGAAACATTAACATTCACCGCTTCGCTGTTAGTGTCAAGCCTCTTATGAGCCATTTGGCACC

Fln Alignment:

Contig5188___QRDQLVNLIKSLSQAKTSSVHELRILGSKSSIDAGVXXXXXXXXXXXXXELLQYMAELQARASNLVDEIQKLKMKNIQLERQLNTTGNADDKQ
D5A8U8______________QRDQIATVMKYMSQGEAPPAYCSSNLASKAASHGGAENYMFEASSNRERELLLQITELQNSVASLVDELEKSKLRNIQLERKLNAVFNKEEEE

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
911		77	22		0.999999
912	22	77			0.999999
916	22			77	0.999999
918		22		77	0.999999
919		22	77		0.999999
920	22			77	0.999999
924		77		22	0.999999
925	11	22			0.999999
927		22		77	0.999999
928			22	77	0.999999
930		22		77	0.999999
975	85			14	0.993533
976		85	14		0.993533
979			14	85	0.993533
982	14			85	0.993533
984	14		85		0.993533
985	85		14		0.993533
986	85	14			0.993533
987		14	85		0.993533
990		85	14		0.993533
991			14	85	0.993533
993		14	85		0.993533
995	85	14			0.993533
998		14		85	0.993533
1343		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain