SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5173

Length: 373 nt

Origin of reads: Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene5173
TAAGAGAAAACATTGAAGGGATAGTTCATGAGGATGAATATACACTCATTGGATTTCAAATGATCTTCCCTGCGATGTTGGAAGAGGCAAGAGGCTTGTGCTTGGAACTTCCTTACGATTTGACACCCATCAAACTCATGCTCTCTCATCGAGAAGAAATCATAAAGGGCAAAGGAATAGACCATATGCATGAGTATGACTCATCTTTAATCTATCTAATCGAGGGGATTCATAAGATAGTTGACTGGAATAAAGTTCTTGAGCATCAGAACATGGATGGTTCACTCTTCAATTCTCCTTCTGCGACCGCTTGTGCTCTAATGCATACGAGGAAGAGCAATTGTCTTGAGTATTTGAGTTCAATGCTGCAAAA

Ace file of the UniGene sp_v2.0_unigene5173 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	(-)-ent-kaurene synthase n=4 Tax=Picea RepID=D2X8G1_PICGL	-	-	91%
FL-Next	tr=(-)-ent-kaurene synthase; Picea glauca (White spruce) (Pinus glauca).	-	-	91%
Blast2go	kaurene synthase	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ent-kaurene synthase.	EC:4.2.3.19	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Diterpenoid biosynthesis	00904	73%
Blast2go	Biosynthesis of plant hormones	01070	73%
Blast2go	Metabolic pathways	01100	73%
Blast2go	Biosynthesis of secondary metabolites	01110	73%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	73%
Blast2go	ent-kaurene synthase activity	GO:0009899	Molecular Function	73%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	73%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	73%
Blast2go	cytoplasm	GO:0005737	Cellular Component	73%
Blast2go	intracellular organelle	GO:0043229	Cellular Component	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D2XEB3

Fln msg: Distance to subject end: 519 aas, your sequence is shorter than subject: 123 - 757

Fln protein: RENIEGIVHEDEYTLIGFQMIFPAMLEEARGLCLELPYDLTPIKLMLSHREEIIKGKGIDHMHEYDSSLIYLIEGIHKIVDWNKVLEHQNMDGSLFNSPSATACALMHTRKSNCLEYLSSMLQ

Protein Length: 124

Fln nts: TAAGAGAAAACATTGAAGGGATAGTTCATGAGGATGAATATACACTCATTGGATTTCAAATGATCTTCCCTGCGATGTTGGAAGAGGCAAGAGGCTTGTGCTTGGAACTTCCTTACGATTTGACACCCATCAAACTCATGCTCTCTCATCGAGAAGAAATCATAAAGGGCAAAGGAATAGACCATATGCATGAGTATGACTCATCTTTAATCTATCTAATCGAGGGGATTCATAAGATAGTTGACTGGAATAAAGTTCTTGAGCATCAGAACATGGATGGTTCACTCTTCAATTCTCCTTCTGCGACCGCTTGTGCTCTAATGCATACGAGGAAGAGCAATTGTCTTGAGTATTTGAGTTCAATGCTGCAAAA

Fln Alignment:

Contig5173___RENIEGIVHEDEYTLIGFQMIFPAMLEEARGLCLELPYDLTPIKLMLSHREEIIKGKGIDHMHEYDSSLIYLIEGIHKIVDWNKVLEHQNMDGSLFNSPSATACALMHTRKSNCLEYLSSMLQ
D2XEB3______________RENIEGIVHEDEYTPIGFQIIFPAMLEEARGLGLELPYDLTPIKLMLTHREKIMKGKAIDHMHEYDSSLIYTVEGIHKIVDWNKVLKHQNKDGSLFNSPSATACALMHTRKSNCLEYLSSMLQ

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
127	16	83			0.994512
316	20			80	0.995493
331	33		66		0.997452
334			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain