SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5166

Length: 1002 nt

Origin of reads: Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene5166 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	unknown [Picea sitchensis]	-	-	9.14294e-29	90%

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
383	66		33		0.997452
826	88	11			0.923564
830		12		87	0.992554
831	12	87			0.992554
832	12			87	0.992554
833		87	12		0.992554
834		87	12		0.992554
839	87	12			0.992554
841	12			87	0.992554
843			12	87	0.992554
862	16	83			0.994512
863		83		16	0.994512
864		83	16		0.994512
865	16	83			0.994512
866			20	80	0.995493
867		80		20	0.995493
868	80		20		0.995493
870	80	20			0.995493
875		20	80		0.995493
877	20			80	0.995493
878			20	80	0.995493
879		80	20		0.995493
884	80	20			0.995493
888		80	20		0.995493
889	75			25	0.996473
890			25	75	0.996473
895	25	75			0.996473
897	25			75	0.996473
898		50	25	25	0.995533
899		75		25	0.996473
900		25		75	0.996473
901	25	50		25	0.995533
902	50	50			1.0
903			25	75	0.996473
905	25	50		25	0.995533
906	75	25			0.996473
911			25	75	0.996473
912	25			75	0.996473
914			33	33	0.997753

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain