SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5163

Length: 1719 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5163

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01762, Galactosyl_T, Galactosyltransferase	-	-	5.60519e-45	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	avr9 elicitor response protein	-	-	0.0	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Galactosylxylosylprotein 3-beta-galactosyltransferase.	EC:2.4.1.134	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Glycosaminoglycan biosynthesis - chondroitin sulfate	00532	80%
Blast2go	Glycosaminoglycan biosynthesis - heparan sulfate	00534	80%
Blast2go	Metabolic pathways	01100	80%

Source	GOs	Term	Type	Identity
Blast2go	protein glycosylation	GO:0006486	Biological Process	80%
Blast2go	galactosylxylosylprotein 3-beta-galactosyltransferase activity	GO:0047220	Molecular Function	80%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%
Blast2go	mitochondrion	GO:0005739	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Glycosyl transferase, family 31	IPR002659	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE09

Fln msg: your sequence is longer than subject: 401 - 335

Fln protein: MRSRNNSGTVSSKCVVILCIACFCAGLLFTDRMWRTPEANDHSHTTTIKRRQDQELQLSQDGCEQKRKLATERDIMGEVSKTHETIQMLDKTISSLEFELVASRAAQDKNLGGLPALENPSGEASSEKPKVFVVIGINTAFSSRKRRDSVRETWMPRGTRLSQLEQEKGIVIRFVIGRSATPGGILDRAIEAEGAQHKDFLTIDHVEGYHELSAKTKIYFATAVAKWDADFYVKVDDDVHVNLGALATTLARHRVKPRVYIGCMKSGPVLAERDVKYHEPEHWKFGEQGNKYFRHATGQIYAISKDLARYISINLPILHKYANEDVSLGSWFIGLEVEHIDDRNMCCGTPPDCHWKAQAGNVCVASFDWSCSGICKSVERIKSVHERCGEGDAAVWSTFF*

Protein Length: 402

Fln nts: ATGGGAGAGGCAGAGGAGGAGAAATCGGAACAAGAAGGAAGAATAACTGTTCAGTAATAATAAGAATATTTAAAATTCTCCCCTCTGGCAAA_-_ATGAGGAGCAGAAATAATTCCGGAACGGTCTCATCAAAATGTGTAGTGATCCTCTGCATTGCGTGTTTCTGTGCGGGCTTGCTCTTCACCGACAGGATGTGGAGAACTCCTGAAGCAAATGACCACAGTCACACAACAACAATAAAAAGACGCCAAGATCAGGAACTACAACTGTCCCAAGATGGTTGTGAACAAAAGCGGAAGCTTGCTACAGAGAGGGATATTATGGGTGAAGTGTCTAAGACACACGAAACAATTCAGATGTTAGACAAAACAATTTCCTCATTAGAATTTGAGTTGGTTGCTTCTCGAGCTGCACAAGATAAAAACCTTGGTGGTTTGCCTGCTCTTGAAAACCCTTCTGGAGAAGCTTCCAGTGAGAAACCAAAGGTTTTTGTCGTGATTGGAATCAACACAGCTTTCAGTAGCAGAAAACGACGGGACTCTGTACGAGAAACCTGGATGCCACGAGGGACGAGACTCAGTCAGCTTGAGCAGGAAAAGGGAATTGTAATTAGATTTGTCATTGGGCGGAGTGCTACACCTGGTGGAATCTTGGATCGCGCCATTGAAGCAGAAGGTGCTCAGCACAAGGATTTCTTGACGATTGATCACGTTGAAGGCTATCATGAACTATCTGCAAAGACAAAAATTTATTTTGCCACCGCAGTGGCCAAATGGGATGCTGACTTTTATGTCAAGGTTGATGATGATGTGCATGTGAATCTAGGAGCATTGGCTACCACTCTTGCACGACATCGAGTGAAACCAAGAGTGTATATAGGTTGTATGAAGTCTGGACCTGTCCTTGCAGAAAGAGATGTCAAATATCATGAGCCGGAACACTGGAAGTTTGGAGAACAGGGAAACAAATACTTTAGACATGCCACTGGACAAATTTATGCGATTTCAAAGGATCTAGCTAGATACATATCTATAAATTTGCCCATATTGCATAAGTACGCAAATGAGGATGTTTCATTGGGCTCCTGGTTTATTGGATTGGAAGTTGAGCATATAGATGACCGCAATATGTGCTGTGGGACTCCTCCAGACTGCCATTGGAAAGCACAGGCTGGAAATGTATGTGTTGCTTCATTTGATTGGAGCTGCAGTGGGATCTGCAAATCCGTGGAAAGAATAAAGTCTGTGCATGAACGCTGTGGAGAGGGAGATGCTGCGGTGTGGAGCACTTTTTTCTGA___GCAGCATATATAGCTATCAGCCAAATCAATTATTTCACCAGTGTAAATGTATTGAATCTCTTCCCATGCATGTCAATAAACTCAACAACAACAAGAGTACAGACACGGGAGAGAGTATATTATGTGGGCATAAATATTTTTCTTAAATCGTGGTAAGTTTAGACCTGTCAGATACGAGGAATTGGAAGTGCAGGGAGTTATGGGTTATAAATTGACGTCTCTCAAGCGAATACAGACATCAATTTGGTTTCTCTGTATATCCTCTTTTAAGGAATCTTGTCTTTTCGTTCTGGTATTGGTACAAGACCTGAGTTTAGTAGACACTCCTGCTTGTGCAAGTTTACCTTAATTTGTAATGATGGAATGAGGCAGCTGTATGCTTTTCCTTCTGAAATTTGTTAAAAAAACAAAATGGTGGAAGGTT

Fln Alignment:

Contig5163___KTHETIQMLDKTISSLEFELVASRAAQDKNLGGLPALENPSGEASSEKPKVFVVIGINTAFSSRKRRDSVRETWMPRGTRLSQLEQEKGIVIRFVIGRSATPGGILDRAIEAEGAQHKDFLTIDHVEGYHELSAKTKIYFATAVAKWDADFYVKVDDDVHVNLGALATTLARHRVKPRVYIGCMKSGPVLAERDVKYHEPEHWKFGEQGNKYFRHATGQIYAISKDLARYISINLPILHKYANEDVSLGSWFIGLEVEHIDDRNMCCGTPPDCHWKAQAGNVCVASFDWSCSGICKSVERIKSVHERCGEGDAAVWST
D5AE09______________KIVKTSLSLDKTISSLEMELAVARTAKSANLNGSPVLEKPDGRGSEVRQKAFVVIGINTAFSSRKRRDSVRETWMPQGPKLKQLEEKKGIVIRFVIGHSVTPGGILDRAIDAEDAQHNDFLRLEHVEGYHELSAKTKTYFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRYRSKPRIYIGCMKSGPVLAQKGVKYHEPEYWKFGEEGNRYFRHATGQIYAISRDLATYISINSPILHRYANEDVSLGAWFIGLDVEHIDERSMCCGTPPDCEWKAQAGNVCVASFDWTCSGICKSVERLKEVHRTCSEGDGAVWST

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1101	83	16			0.994512
1117	16		16		0.988813
1119	16		16		0.988813
1234			85	14	0.993533
1292		28		71	1.0
1319		71		28	1.0
1337		87		12	0.992554
1378	75		25		1.0
1458		20		80	0.995493
1533			90	10	0.90298
1556		11		88	0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
1378	1389	CAA CAA CAA CAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain