SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5150

Length: 740 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5150

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam04506, Rft-1, Rft protein	-	-	5.0e-35	33%
FL-Next	tr=Nuclear division RFT1-like protein; Sisymbrium irio (London rocket).	-	-	0.0	54%
Blast2go	nuclear division rft1-like protein	-	-	0.0	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	nuclear division	GO:0000280	Biological Process	0.0	71%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	RFT1	IPR007594	-	0.0	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
260			87	12	0.992554
263	12		87		0.992554
264		12	87		0.992554
266		87		12	0.992554
295	20		80		0.995493
298			80	20	0.995493
503	33			66	0.997452
504	33			66	0.997452
507		66		33	0.997452
734		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain