SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5084

Length: 884 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene5084 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	U-box domain-containing protein 44 [Arabidopsis thaliana] sp\|Q9LM76.1\|PUB44_ARATH RecName: Full=U-box domain-containing protein 44; AltName: Full=Plant U-box protein 44; AltName: Full=Protein SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1 gb\|AAF80621.1\|AC069	-	-	1.0e-17	61%
FL-Next	Isoform 2 of U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44	-	-	0.0	61%
Blast2go	protein	-	-	3.38845e-27	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	3.38845e-27	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	3.38845e-27	74%
Blast2go	leaf senescence	GO:0010150	Biological Process	3.38845e-27	74%
Blast2go	regulation of chlorophyll biosynthetic process	GO:0010380	Biological Process	3.38845e-27	74%
Blast2go	regulation of chlorophyll catabolic process	GO:0010271	Biological Process	3.38845e-27	74%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	3.38845e-27	74%
Blast2go	transmembrane receptor protein serine/threonine kinase binding	GO:0070696	Molecular Function	3.38845e-27	74%
Blast2go	ubiquitin ligase complex	GO:0000151	Cellular Component	3.38845e-27	74%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.38845e-27	74%
Blast2go	negative regulation of abscisic acid biosynthetic process	GO:0090359	Biological Process	3.38845e-27	74%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
675		75	25		1.0
679		25		75	1.0
680	25			75	1.0
682		25	75		1.0
687			25	75	1.0
693			25	75	1.0
694	25			75	1.0
696			25	75	1.0
710		83	16		0.994512
715			16	83	0.994512
716	16			83	0.994512
718	16		83		0.994512
719			16	83	0.994512
720		16		83	0.994512
721	83	16			0.994512
724	83		16		0.994512
726		87		12	0.992554
730		12	87		0.992554
732	12	87			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain