SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5025

Length: 1557 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5025

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RING/U-box domain-containing protein [Arabidopsis thaliana] gb\|AAF23258.1\|AC015985_16 putative RING zinc finger protein [Arabidopsis thaliana] gb\|AAF23312.1\|AC016661_37 unknown protein [Arabidopsis thaliana] gb\|AAL66972.1\| putative RING zinc finger protei	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	e3 ubiquitin-protein ligase mgrn1-like	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Vacuolar (H+)-ATPase G subunit	IPR005124	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRJ5

Fln msg: Overlapping hits, possible frame ERROR between 801 and 710,

Fln protein: MGTVFSNGRGRTNNPNNPPPPPPPPPPPAAQLVGYGGYVLAYPLQPQTYHHASRLNPTSFDPQAHISQGAHGGTGPPPLLPSVEPQKVVTIRNDANLKKETLRLERDEENPGRLLVAFTFDATVPGSISIFFFAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRQPTGTGIDLSVFDDKYLSKEGPDEEFPIAVRADASSTSNSIDLLDTTSEQIGSPLPKAVNCQITQAVIGKKDNGEYNVRVVRQILWVNGVRYELQEIYGIGNSVGTDFDDNDPGKECVICMSEPRDTMILPCRHMCLCSGCTKVLRFQTKRCPICRQPVERLLEMKVNRNAD*

Protein Length: 341

Fln nts: TTGCAGTCCATAGCATGTCTAACCAGCACGGCAACCATCAAGCCGGGGTCATATGGCTCTTAGGTACTTGGGAGATTCATGGCCCTTCCTCACTATCTTCCCCATTATCCGTGGGTTGGTGGCTTTGGTCTCCCAACGCAACATTTTAAAATTGGATGGCTTTTTATGCTGTTCGTCACCATCTTTGGTCCCGCACCTCTGCATTCAGATCATCCACCACAGTACAAAATGCCCACAAATTTCCAGAGACAAAAACATTTGATGTGTCCTTCCTTGCTCGATTGAACCAACCTTGAACATTCATCC_-_ATGGGTACGGTATTCAGTAACGGAAGAGGAAGGACCAACAATCCCAATAATCCTCCCCCACCACCACCTCCTCCTCCACCGCCTGCTGCACAGCTGGTAGGGTATGGGGGATATGTTCTTGCATACCCGCTTCAGCCTCAGACCTATCACCATGCCTCCCGTCTCAATCCGACCTCCTTTGATCCCCAAGCTCACATCTCCCAGGGCGCCCATGGTGGTACGGGACCGCCGCCCTTGCTTCCTTCTGTAGAACCCCAGAAGGTTGTCACCATAAGGAATGATGCCAATTTGAAGAAGGAAACCTTGAGGCTGGAGCGCGACGAGGAGAATCCCGGTCGGCTTCTGGTGGCTTTTACATTTGATGCTACTGTTCCAGGGAGCATCAGTATTTTCTTCTTTGCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGACAACCCACAGGAACAGGCATTGATCTCTCTGTGTTTGATGATAAGTATCTATCTAAGGAAGGACCTGATGAAGAGTTTCCAATTGCTGTCAGGGCAGATGCGAGTTCAACAAGTAATTCAATAGATCTCCTAGATACAACTAGTGAGCAGATTGGTAGCCCCTTGCCGAAAGCTGTCAATTGTCAGATCACACAAGCTGTCATTGGAAAGAAGGATAATGGAGAGTATAATGTCAGAGTTGTGAGGCAAATCCTATGGGTTAATGGTGTACGATATGAGTTACAAGAAATATACGGGATTGGAAATTCTGTAGGGACTGATTTTGATGACAATGATCCTGGGAAGGAATGTGTTATTTGCATGTCAGAACCAAGGGATACAATGATATTGCCTTGCAGGCATATGTGTCTTTGCAGTGGATGTACAAAAGTTCTCCGTTTCCAAACAAAGCGATGTCCTATTTGTCGTCAACCAGTAGAGAGGCTTCTAGAAATGAAGGTGAACAGAAATGCAGATTGA___AGATACTGATTTTTGAGGGAGAGTTCTCTATTGCAGCCCTTTTGAAAGTAGTGATTATGAAATCTGAATTGAATTTTCAGTTCTTAGTCATTTTCTGGGGAGGTGAAGTTGTATATTTTGTAAATCCGGGCCTTGGGAAAGAATATAATTGTAAAAATTTTCACGGATGTTACAATAAGTTATTCTTTGAGATGAATTTCTGTATCTTGAGGGTTTGTGATGGTAACTGCTAA

Fln Alignment:

Contig5025___MGTVFSNGRGRTXXXXXXXXXXXXXXXX-AAQLVGYGGYVLAYPLQPQTYHHASRLNPTSFDPQAHISQGA---HGGTGPPPLLPSVEPQKVVTIRNDANLKKETLRLERDEENPGRLLVAFTFDATVPGSISIFFFAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRQPTGTGIDLSVFDDKYLSKEGPDEEFPIAVRADASSTSNSIDLLDTTSEQIGSPLPKAVNCQITQAVIGKKDNGEYNVRVVRQILWVNGVRYELQEIYGIGNSVGTDFDDNDPGKECVICMSEPRDTMILPCRHMCLCSGCTKVLRFQTKRCPICRQPVERLLEMKVNRNAD
A9NRJ5______________MGTVFSNRRGRTNNPNDHPPPPPPPPPPPAAQLVGYGGYVLAYPIQPQSHYHASRLHPNSFDPQAHFPRGSSWSHGCMGPPPLLPPVEPQKVVTIRNEANLKKETLKLERDEENPDRLLVAFTFDATVPGSISIFFFAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRQPTGTGIDLSVFDDKDLSKEGPDEEFPIAVRADASSTSNSVDIPYTASEEIGSPLPKTVNCQITQAVIGKKDNGEYNVRVVRQILWVNGIRYELQEIYGIGNSVGTDFYDNDPGKECVICMSEPRDTMILPCRHMCLCSGCAKVLRFQTKRCPICRQSVERLLEMKVNRNED

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1497	83		16		0.994512
1509		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain