SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5017

Length: 1207 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene5017 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF659 domain containing protein	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	uncharacterized protein loc100852591	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	65%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	65%
Blast2go	catalytic activity	GO:0003824	Molecular Function	65%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Polymorphic outer membrane protein repeat	IPR003368	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3		IPR015706	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Full-Lengther Next Prediction

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
734	60		40		1.0
745		40	60		1.0
746	20			80	0.995493
766	60	20			0.99255
781		80	20		0.995493
835		25		75	0.996473
870	25	25		50	0.995533
871		25		75	0.996473
872		25		75	0.996473
910		50		50	1.0
934	16			16	0.988813
948	27		72		1.0
956	18		81		0.999994
987		90		10	0.90298
990		10		90	0.90298
991	20		80		0.999996
992		90		10	0.90298
993	90			10	0.90298
994			88	11	0.923564
995		88		11	0.923564
996			12	87	0.992554
1002		14		85	0.993533
1004		14		85	0.993533
1010		66		33	1.0
1011		66		33	1.0
1012	16		83		0.994512
1014		83		16	0.994512
1017	83		16		0.994512
1035		16		83	0.994512
1037		83	16		0.994512
1039	50			50	1.0
1063	16		83		0.994512
1065	16		83		0.994512
1072	16	83			0.994512
1074		16		83	0.994512
1085	16			83	0.994512
1104		83		16	0.994512
1105			16	83	0.994512
1106	16	83			0.994512
1107		83	16		0.994512
1109			20	80	0.995493
1113			20	80	0.995493
1115	80	20			0.995493
1117	20		80		0.995493
1121			80	20	0.995493
1126	20			80	0.995493
1127		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain