SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5014

Length: 473 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene5014
CCCAGACAGACAGCCTCTGCAACTAAGGGCGCTTCGAAACCATGGGGCAGGGGAAGATCCTCTGCTGCTGCGTGTTCTGAAATTGTGAGGTTTTCCACAAGCCAGTCTGGTGAGATTGGCCGCATCCCTACAGAATGGGCTCGTTGTCTCATTCCTTTGGTCAATGCAGAGAAGGTCAAGATAGAAGGTTACTGCAAAGAAGCCCCTGAAAATCTTGGACTAATGGACAGTATACTTCTATTTGTGAGCTTATTCATCAACCGTACCATGTTCCAAAATTGCCATCGAACTTCATCTAAATTAATTCATTCCTCAACAGATGATATCACTGTTCGTCCTCTTCCAACTTTGTTTAAATTGCTTGGCAAAGAACCTTTTAAAAAGGCTGAATTCACTCCCGAGGATCTTGATACCAGAAAGCGTTCCCTAGATTTTAGGGTCACTTCTACCATACAGATGTCATCGCTGCCTTC

Ace file of the UniGene sp_v2.0_unigene5014

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA repair helicase rad5,16, putative n=1 Tax=Ricinus communis RepID=B9SN70_RICCO	-	-	1.99993e-41	57%
FL-Next	sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Blast2go	dna repair helicase	-	-	0.0	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	0.0	70%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	70%
Blast2go	Lipopolysaccharide biosynthesis	00540	70%
Blast2go	Folate biosynthesis	00790	70%
Blast2go	Metabolic pathways	01100	70%

Source	GOs	Term	Type	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	70%
Blast2go	double-strand break repair via homologous recombination	GO:0000724	Biological Process	70%
Blast2go	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	GO:0016818	Molecular Function	70%
Blast2go	metal ion binding	GO:0046872	Molecular Function	70%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	70%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	HIP116, Rad5p N-terminal	IPR014905	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FNI6

Fln msg: Distance to subject end: 730 aas, your sequence is shorter than subject: 157 - 1029

Fln protein: PRQTASATKGASKPWGRGRSSAAACSEIVRFSTSQSGEIGRIPTEWARCLIPLVNAEKVKIEGYCKEAPENLGLMDSILLFVSLFINRTMFQNCHRTSSKLIHSSTDDITVRPLPTLFKLLGKEPFKKAEFTPEDLDTRKRSLDFRVTSTIQMSSLP

Protein Length: 158

Fln nts: CCCAGACAGACAGCCTCTGCAACTAAGGGCGCTTCGAAACCATGGGGCAGGGGAAGATCCTCTGCTGCTGCGTGTTCTGAAATTGTGAGGTTTTCCACAAGCCAGTCTGGTGAGATTGGCCGCATCCCTACAGAATGGGCTCGTTGTCTCATTCCTTTGGTCAATGCAGAGAAGGTCAAGATAGAAGGTTACTGCAAAGAAGCCCCTGAAAATCTTGGACTAATGGACAGTATACTTCTATTTGTGAGCTTATTCATCAACCGTACCATGTTCCAAAATTGCCATCGAACTTCATCTAAATTAATTCATTCCTCAACAGATGATATCACTGTTCGTCCTCTTCCAACTTTGTTTAAATTGCTTGGCAAAGAACCTTTTAAAAAGGCTGAATTCACTCCCGAGGATCTTGATACCAGAAAGCGTTCCCTAGATTTTAGGGTCACTTCTACCATACAGATGTCATCGCTGCCTTC

Fln Alignment:

Contig5014___TKGASKPWGRGRSSAAACSEIVRFSTSQSGEIGRIPTEWARCLIPLVNAEKVKIEGYCKEAPENLGLMDSILLFVSLFINRTMFQNCHRTSSKLIHSSTDDITVRPLPTLFKLLGKEPFKKAEFTPEDLDTRKRSLDFRVTSTIQMSSL
Q9FNI6______________TTPGKRGFGRGRPALRGASDIVRFSTKDSGEIGRIPNEWARCLLPLVRDKKIRIEGSCKSAPEALSIMDTILLSVSVYINSSMFQKHSATSFKTASNTAEESMFHPLPNLFRLLGLIPFKKAEFTPEDFYSKKRPLSSKDGSAIPTSLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain