SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene5000

Length: 1035 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene5000

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heavy-metal-associated domain-containing protein [Arabidopsis thaliana] gb\|ABN04757.1\| At1g23000 [Arabidopsis thaliana] gb\|AEE30320.1\| heavy-metal-associated domain-containing protein [Arabidopsis thaliana]	-	-	8.0e-17	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	chloroplast-targeted copper	-	-	1.83791e-22	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion transport	GO:0030001	Biological Process	1.83791e-22	85%
Blast2go	metal ion binding	GO:0046872	Molecular Function	1.83791e-22	85%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Repetitive proline-rich cell wall protein repeat	IPR003883	-	-
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
362	33			66	0.997452
364	66		33		0.997452
365			33	66	0.997452
366			33	66	0.997452
408	66		33		0.997452
450	80		20		0.995493
452			20	80	0.995493
453	20			80	0.995493
456		80		20	0.995493
458			20	80	0.995493
459	80		20		0.995493
460		20		80	0.995493
463		20	80		0.995493
465		20		80	0.995493
533		25		75	0.996473
589		12		87	0.992554
592		12	87		0.992554
594			87	12	0.992554
595	87	12			0.992554
596	12		87		0.992554
647	77			11	0.968132
648	88		11		0.923564
650		11	88		0.923564
654		11		88	0.923564
655	11		88		0.923564
656		11	88		0.923564
657			88	11	0.923564
749	44		55		1.0
859	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain