SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4991

Length: 636 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4991

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA ligase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SQI2_VITVI	-	-	65%
FL-Next	sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	69%
Blast2go	dna ligase	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA ligase (ATP).	EC:6.5.1.1	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	DNA recombination	GO:0006310	Biological Process	79%
Blast2go	response to X-ray	GO:0010165	Biological Process	79%
Blast2go	double-strand break repair	GO:0006302	Biological Process	79%
Blast2go	telomere maintenance	GO:0000723	Biological Process	79%
Blast2go	DNA replication	GO:0006260	Biological Process	79%
Blast2go	DNA ligation involved in DNA repair	GO:0051103	Biological Process	79%
Blast2go	DNA integration	GO:0015074	Biological Process	79%
Blast2go	DNA ligase (ATP) activity	GO:0003910	Molecular Function	79%
Blast2go	DNA binding	GO:0003677	Molecular Function	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	intracellular	GO:0005622	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	DNA ligase, ATP-dependent	IPR000977	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	DNA ligase, ATP-dependent, N-terminal	IPR012308	-	-
Sma3	DNA ligase, ATP-dependent, C-terminal	IPR012309	-	-
Sma3	DNA ligase, ATP-dependent, central	IPR012310	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
305	14		85		0.993533
307	14	85			0.993533
308			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain