SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4973

Length: 935 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4973

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Cyclin-T1-3; Short=CycT1;3 gb\|AAX92940.1\| Cyclin, N-terminal domain, putative [Oryza sativa Japonica Group] gb\|EEC67709.1\| hypothetical protein OsI_35185 [Oryza sativa Indica Group]	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	cyclin-t1-5-like isoform 1	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin C/H/T/L	IPR015429	-	-
Sma3		IPR015706	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
765	16			83	0.994512
769		83		16	0.994512
852		33		66	0.997452
868		33		66	0.997452
869	33			66	0.997452
870	33	66			0.997452
871	33			66	0.997452
872		66	33		0.997452
876		33	66		0.997452
877	33	66			0.997452
880		66		33	0.997452
881		66	33		0.997452
882	66			33	0.997452
883	66		33		0.997452
886	33	66			0.997452
889			66	33	0.997452
890		66		33	0.997452
894	66			33	0.997452
895			33	66	0.997452
896	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain