SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4927

Length: 544 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene4927
CGTCGTGACCTTGGCTGTCACTCAGTGTAGTATGGGAGTAGAGAAAGGTGGTGGTATGTAAAGTTGTAAGTTGCGTATATATAGAGGAAGTAAGGAGGGATTATGGGAGCTGTGATTTGGTAGTGCTAGGAGTGGGTAGATAGGGAGTTGGGGACTCTGATCAATGGCAGGCTCTGGTGGTGTTGAGGTTTGGGGTGATCGGAGGTCTGCCAGCAGAGGAGGATGGAGATCTGCTAGCACTGGAATGTGGAGAGCTTCTGATGATGTTTTCAGTCGGACTACAAGTTTCAGGAGGGAGCAGGATGATGAGGAGGCCTTAAAGTGGGCTGCCATTGAGAGGCTCCCAACCTATGAAAGGCTGAGGAAGGCTATTCTCATGCAGGAGTTGGACGATGGAAATGTTGTGCATGAGGAAGTTGATGTTTCAAGATTAGACCTCAATGACAGACAACATCTCATTGAGAAGATCCTGCGCGTTACCGAAGAGGACAATGAACGCTTCCTGCTCAAACTCCGGGATCGCAGTGAGTGACAGGCCACTGAC

Ace file of the UniGene sp_v2.0_unigene4927

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Pleiotropic drug resistance protein 4 emb\|CAD59569.1\| PDR-like ABC transporter [Oryza sativa Japonica Group] tpg\|DAA00887.1\| TPA_exp: PDR4 ABC transporter [Oryza sativa (japonica cultivar-group)]	-	-	2.0e-21	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	pleiotropic drug resistance protein 2-like	-	-	5.21157e-28	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	5.21157e-28	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		5.21157e-28	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	ATP catabolic process	GO:0006200	Biological Process	5.21157e-28	77%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	5.21157e-28	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	5.21157e-28	77%
Blast2go	ATPase activity	GO:0016887	Molecular Function	5.21157e-28	77%
Blast2go	membrane	GO:0016020	Cellular Component	5.21157e-28	77%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN70

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 329 aas, your sequence is shorter than subject: 123 - 443

Fln protein: MAGSGGVEVWGDRRSASRGGWRSASTGMWRASDDVFSRTTSFRREQDDEEALKWAAIERLPTYERLRKAILMQELDDGNVVHEEVDVSRLDLNDRQHLIEKILRVTEEDNERFLLKLRDRSE*

Protein Length: 124

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGTAGTATGGGAGTAGAGAAAGGTGGTGGTATGTAAAGTTGTAAGTTGCGTATATATAGAGGAAGTAAGGAGGGATTATGGGAGCTGTGATTTGGTAGTGCTAGGAGTGGGTAGATAGGGAGTTGGGGACTCTGATCA_-_ATGGCAGGCTCTGGTGGTGTTGAGGTTTGGGGTGATCGGAGGTCTGCCAGCAGAGGAGGATGGAGATCTGCTAGCACTGGAATGTGGAGAGCTTCTGATGATGTTTTCAGTCGGACTACAAGTTTCAGGAGGGAGCAGGATGATGAGGAGGCCTTAAAGTGGGCTGCCATTGAGAGGCTCCCAACCTATGAAAGGCTGAGGAAGGCTATTCTCATGCAGGAGTTGGACGATGGAAATGTTGTGCATGAGGAAGTTGATGTTTCAAGATTAGACCTCAATGACAGACAACATCTCATTGAGAAGATCCTGCGCGTTACCGAAGAGGACAATGAACGCTTCCTGCTCAAACTCCGGGATCGCAGTGAGTGACAGGCCACTGAC

Fln Alignment:

Contig4927___MWRASDDVFSRTTSFRREQDDEEALKWAAIERLPTYERLRKAILMQELDDGNV--VHEEVDVSRLDLNDRQHLIEKILRVTEEDNERFLLKLRDR
B8LN70______________LFGGSDRFPSLSSSSVARRCEEEALAWAAIERLPTYERLRTSILNDLVNNQPIGSPHNQIDVTNIPPEARKQLIDRLLGVTDQDNERFLLKLRQR

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
105	80	20			0.995493
106	20	40		20	1.0
107		20	20	40	0.994159
108		40	40	20	1.0
109	40	20	40		1.0
110	20		80		0.995493
493		83		16	0.994512
521		25	75		0.996473
522	75			25	0.996473
525	25	75			0.996473
527	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain