SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4886

Length: 1538 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4886

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam02042, RWP-RK, RWP-RK domain	-	-	5.0e-13	51%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	33%
Blast2go	uncharacterized protein loc100272390	-	-	1.55881e-33	50%

Source	InterPros	Term	Type	e value	Identity
Sma3	Plant regulator RWP-RK	IPR003035	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9GT26

Fln msg: your sequence is longer than subject: 349 - 274

Fln protein: MPQESVTNRHMAKLGTDPQQISWDESLTFDEVAKFFSVPIAEAANILGVSSKVLKKISHDNGIPRWPYRKFLAGKTVEEIKREAVRDKEMNEELSKASNENNKTMPSSGSPSVAISSAQMPTPKLPNLAMQNQSKTGSTVNETGRWQPGVATSGHILQPSGSRVPQAARQPYHSGHRAFISTYLDDFKQGFPKNGLSSVSKKWWGSSGSISKEDAPEDSKISETKLTSRKFNESSEGIELGTTNENDGRVTSEVDGFSKEGKTSDSESISKLAGHMGSRDEDLMHISILSRTRKRKAENGRKALKLAVTNGYGTYKIGNKDKILLERIFGSPLPRQWKTSLSFSDGTV*

Protein Length: 350

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTCTCCCCTCAAATGCTTCACGTTTTATGCGTCCAATAGTTGCATTGAATTTGGGTTCAGGCTTTAACTCAACACATCCAAACTGGGCAAGAAAGGAATCTGCGAAATCCATTGTGGGCAGTGAAGCAAGTGGGGTTCGCAGGTATCTAAACATTTGGAGGGCAATCGACTTGAATTAAAGAAGATAT_-_ATGCCTCAGGAGTCGGTTACGAATCGTCACATGGCAAAGCTTGGGACGGATCCCCAGCAAATCAGTTGGGATGAGTCTCTTACGTTCGACGAGGTCGCCAAATTTTTCTCGGTCCCCATTGCAGAAGCTGCTAACATATTAGGTGTTTCTAGTAAAGTTCTAAAGAAGATATCTCATGATAATGGCATTCCAAGATGGCCATACCGTAAGTTCTTGGCAGGGAAAACAGTTGAAGAAATAAAACGTGAAGCAGTCCGAGATAAGGAAATGAATGAAGAACTTTCAAAGGCATCAAATGAGAATAATAAAACTATGCCATCAAGTGGAAGCCCATCAGTGGCTATATCATCTGCTCAAATGCCCACACCCAAACTCCCAAATTTGGCCATGCAAAATCAAAGCAAAACAGGGAGTACAGTCAATGAGACTGGTAGATGGCAACCAGGGGTTGCCACTTCAGGTCATATTTTGCAACCTTCTGGCAGTAGAGTCCCTCAAGCTGCTCGGCAACCATATCACTCGGGTCATAGGGCTTTTATTTCGACATACCTGGATGATTTCAAACAAGGATTCCCCAAAAATGGCTTGTCATCTGTTTCAAAGAAATGGTGGGGAAGCAGTGGGTCTATCAGCAAGGAGGATGCACCTGAAGACTCAAAAATAAGTGAGACAAAATTAACAAGTAGAAAATTTAATGAATCATCAGAAGGCATTGAACTTGGGACTACAAATGAAAATGATGGCAGGGTCACTTCTGAGGTGGATGGATTTTCGAAGGAAGGGAAGACTTCTGACAGTGAAAGTATTTCAAAACTTGCTGGCCACATGGGATCCCGGGATGAAGACCTGATGCACATTAGCATACTCTCCAGAACTAGAAAGAGAAAAGCGGAAAATGGAAGGAAAGCATTGAAACTAGCTGTAACTAATGGTTATGGTACATACAAGATTGGGAACAAAGACAAAATTTTGCTTGAACGAATATTTGGATCTCCCTTGCCCAGGCAATGGAAAACAAGCTTAAGTTTTTCAGATGGTACAGTTTAG___TAAGATTTTTCTGTGATTACCAAATTATCAATTTATCTCTTTGGAAAGAAACTTGGGCATATGTTTGACAGGCTGCATGTTTTGGCATTTAAGATTTCTTGCCTACACTGGGAGGACAATGATAAATGTACACTGTACAGTAGTCTGGAGAATTTTATCAATGAATTGATGATCTCAAATTAAAAGAAAATAGTCAATGTATGGGTGATTCCAAATGATGGGAGAACATGGACAGCAGATTCCAGAGTCAGTGTTCTCCATTTGTATTATGGTTTAAT

Fln Alignment:

Contig4886___QQISWDESLTFDEVAKFFSVPIAEAANILGVSSKVLKKISHDNGIPRWPYRKFLAGKTVEEIKREAVRDK-EMNEELSKASNENNKTMXXXXXXXXXXXXXQMPTPKLPNLAMQNQSKTGSTVNETGRWQPGVATSGHILQPSGSRVPQAARQPYH-SGHRAFISTYLDDFKQGFPKNGLXXXXXXXXXXXXXXXXEDAPEDSKISETKLTSRKFNESSEGIELGTTNENDGRVTSEVDGFSKEGKTSDSESISKLAGHMGSRDEDLMHISILSRTRKRKAENGRKALKLAVTNGYGTYKIGNKDKILLERIFGSPLPRQWKTSLSFSDG
B9GT26______________QQPNQSKPPSWEAISKHFSLPLSDAANNLGVCVSVLKKICRDNGLDRWPYRKYLAGKSIEDIRRYAAREKIKAIADLAKAANKS---------------------------GIQQQNNENS--------------KPHKLQQQGTKDVLVGRQHITLTPGLAKGLMGLDEFKYGFPSDGLSTATNKWW-------------GSSLSDTQRATDR-----AGIE---TDEDDGRQSEEKVDAGTSVVIVDEEKGEN--GKMESNEIDPQGTGLLTSVRKRAAEEGREALKLGVYRTYGVNKLGRKQRALLLRIFGSSLPKQWIQDFSSNRG

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
542	66		33		0.997452
544		66	33		0.997452
557	66		33		0.997452
727	80			20	0.995493
728	80			20	0.995493
729		80	20		0.995493
730		80	20		0.995493
731	80	20			0.995493
733	80		20		0.995493
803			75	25	0.996473
836	33		66		0.997452
1253	85			14	0.993533
1257		14	85		0.993533
1258	14		85		0.993533
1259		14		85	0.993533
1260	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain