SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4853

Length: 1774 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4853

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FAP multi-domain protein	-	-	1.0e-07	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	protein	-	-	5.35504e-29	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	5.35504e-29	77%

Source	InterPros	Term	Type	Identity
Sma3	RNA-processing protein, HAT helix	IPR003107	-	-
Sma3	Tetratricopeptide TPR-3	IPR011716	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR76

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 144 - 387

Fln protein: ELCTASFRPVYCIPLDSISSTDLIYQRHYLQIRYCYIKILNIVGFVCI*VQRDVERAEEYYGRAILASPSDGDILSLYANLIWDVHKDVPRAKSYFDQAVEAAPEDCNVLGSYAHFLWNAEHDEEDQDASQQQKIAPPTYFGI*

Protein Length: 145

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCAGACTCTCGGCCGCCCAGCTCCTGAATCATCGGCAGAAATCTGGTCTTAATTGCTCTATTAGCCTTTCATTTCAAGATGTTACTCCGTAGTTCATCCACTCCTGCGCTCAATTCTCTCGTCGGGATTCAACCAAAATCAGAATGGAATTCGCGTGGATCTGTTCGGTTTCCCCACTTTCTTGTTGCTCTCAATAGCGATGGCAAGTGGGATCATCATGATTTACAGCCCTTCTCCGGAAGGACCCTGTCTGAAGCTGATTTACATAATCTCTTATTGTCTAATGGCAGCCCAAGCAGGCAGGGGTTAAGGATGGGCTCCGGTTCTTTGGAGCTCTGTAGAAAGCTCTCTACAGAAAGTTTTTTGAGTAGTGACTTATGGGACGAGGCCCTGGAAGAGGAACTTGAGAATTCTGATACCGAAATTTCAATTGGCTTTCAGAGCGCTGGAGACCCACATGAAGAGTCTCCAGAAAAAATCACGGCAGCCGTTGGAATCCATGTAGGTGAGGGACGATCTGTCTATGGAAGGAGGATATGTGAAGGGAGTGGAGTAGCTTTGGTGTGCGACAGGGCTGTTGTTGGTTCTAAAACTGAGACGGGTTGTGTTAATGGAGGAATTGGGGGTGAAGATGGAGGTGGGTTCTCTGGTGGGACAGGGTATGGAGGTGGTGTGACAGGGTATGGAAGGAGAGGAGGTGGCTTTGGATCAGATTCCAATAACATGGATGCGTACTACAAGAAAATGCTGCAGGCAGATCCTGGCAACCCACTTTTATTGACAAATTACGGGAGGTTCCTGCAGGAGGTGAGTACTGAGGAAGCTGAGCTTTGTTTTAATTTAATACCCTTGGGCTGCTACAAAGTTTTTCAAAGACACACTGAATTGTAATATATCAAGTTCATTAGGAGCTCTGTACTGCCTCTTTTAGGCCCGTATATTGCATCCCTCTTGATAGTATATCATCTACCGATCTCATATATCAAAGACATTATTTACAGATTAGGTATTGTTATATTAAAATTCTCAATATTGTTGGTTTTGTGTGTATTTAGGTTCAGCGTGATGTGGAAAGAGCTGAGGAATATTATGGGAGGGCCATCCTAGCCAGTCCCAGTGATGGAGATATCCTCTCTCTTTATGCCAATCTGATATGGGATGTTCACAAAGATGTACCTCGTGCCAAATCCTATTTTGATCAAGCTGTTGAAGCTGCTCCAGAAGACTGCAATGTTCTTGGATCGTATGCCCATTTCCTATGGAATGCAGAGCATGATGAAGAAGATCAGGATGCTTCTCAGCAGCAGAAAATAGCACCCCCAACATATTTTGGTATCTGA___TCACATCACAGCCATAATCGGAATTTATTTTCAATGAACAGAGCTAAAATCAGTGCTGCAGCTCAGATTTTGATAGTCGCAAAATCATCCCGGGCATCATTTGAAAAAAATGCAAGTTGGAGATCGTTATGTGATATGGCTCTGCGCTCTGAGAGGCTACAGGGAATGTTTTATAATGATCTCCTTGGTAACGGCGGTATTCTACCGGAGACACGGACTGGCCTTGGCGGGGTAAGTGAATGGAAGTGACAACACATTTTAATTTGGAAAAAAGGGGTCAGCTAAAGAAGAATGGGTTCATCTGAGGCTGAGGGTGTTCTTTGAGATGGTTAGTCACATCCATTGAAACGGATCTTGGATGCAATTTAAATGGTCTGCAGGTCATATTATACCAGTAGAAGAAACACC

Fln Alignment:

Contig4853___DSISSTDLIYQRHYLQIRYCYIKILNIVGFVCI*VQRDVERAEEYYGRAILASPSDGDILSLYANLIWDVHKDVPRAKSYFDQAVEAAPEDCNVLGSYAHFLWNAEHDEEDQD
B8LR76______________NSKSSTDMYYQSMLEANPGNPLLLSNYAKFLHE-VQHDMAKAEEYYGRAILASPGDAEVLSLYAKFTWETQNDGARAESYFDRAVKAAPDDCYVLSSYAHFLWNSEEEEDEEN

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1088	81		18		0.999994
1104	88		11		0.923564
1162		14		85	0.993533
1245			50	50	1.0
1269	75		25		0.996473
1337	90	10			0.90298
1338	90	10			0.90298
1339	90			10	0.90298
1341	60		40		1.0
1343		90		10	0.90298
1344	90			10	0.90298
1346		88		11	0.923564
1348	11	88			0.923564
1351	88			11	0.923564
1352		88		11	0.923564
1377		85		14	0.999981
1453			28	71	1.0
1619	50			50	1.0
1621		50	50		1.0
1700	83		16		0.999991
1715	90	10			0.90298
1754	88	11			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain