SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4838

Length: 2069 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene4838
CGTCGTGACCTTGGCTGTCACTCAATTACTATAAGATTTTTGTTTGAGCCAGTAAGCGGTTCATGGCAATGGGGAAGGGTTATTCACTGCTTTGCCCATTCTTTTTTGTTTTACTCATTCGTGTTTTGCAAGCTTCTCATCATGGGTGGGATGAAGCTATTTTGTCGACTCTCAGAGTATCAAAAATCCAGTTCCCCGGCGCCCCGAGAAGCTTATAGAACAGCGTATCATTTTCAGCCCGTTAAACATTGGATGAATGATCCAAATGCGCCATTGTTCTACAAGGGCTACTATCATCTGTTCTACCAATATAATCCCAAGTCGGCTGTGTGGGGACGCATCGTGTGGGGGCATGCAGTTTCAACAGATCTCATAAATTGGAGACATATGACCGGTGCAGCTATATACCCTGATGAATGGTACGATGCCAATGGTGCCTGGTCTGGATCTGCCACTTTCCTACACAAAGGGGGCCCTCCCGTAATCTTATATACAGGATCCAACAATGCCTCGGAACAAGTTCAAGTCATGGCTGTTCCCAAGGACCCATCGGATCATTTGCTACGGGAGTGGAAGAAGATCGCGCAGAATCCCATCATGGTGCCTATTGGTATCAACGTCAGTTCTTTCAGGGATCCAACAACGGCATGGTTGGGATCAGACCAAAGATGGCGAGTCCTGGTTGGCAGCAAAAGCGATGAGAATAAGGTGGGAATGGCATTGATGTTCAGAAGCAAAGATTTCGTTAAATGGGTGAAAGCCAAACATCCGCTGCACTCGGCCAGGCATACTGGAATGTGGGAGTGCCCGGACTTCTACCCTGTGTCCCTCGACTATGGCAGCCATGGCGTTGATACCTCGACCACGGGTCCTTCTGTGAAGCACGTTCTCAAGAACAGTTTGGACGATAACAAAGTAGACTACTATACAGTGGGTCATTACTCGCCCGAGTTGGACAGGTATGTCCCCGACGATGGATCTGTGGAGGGCCACAATGGTTTCAGGTATGACTACGGTAAATTTTATGCGTCCAAGACCTTTTTTGACGATAACAAGTCCCGAAGGATTCTGTGGGGTTGGATCAACGAATCCGACAGCGTGGCTGATGATCTCAACAAAGGATGGGCTTCCCTTCAGGCAATTCCTAGGGTTGTGCAGCTTGATCCTCTTACCGGGAGAAGCCTCGTTCAGTGGCCAGTGCCAGAGCTTGAATCTTTGCGCGAGCATAATATAAGGAAGGACCACGTGGTTTTGGAAAGAGAATCGGTAATGAAGGTGGAGGGATTCAGCTCAGGAGCTGCGCAGGTGGACGTGGAGGTAGAGTTTGAGTTGGGAGGCGATTATGAAACGGTGGAGGAGTTGGAGGGAATGACAGCGACAGCTCAAAGCTTGTGCAGTCGCGGGAACAACAATACGAGGGGATTCGGGTTGATGGTGTTGGCATCTGATGATCTCAAAGAGAGGAGCGCTGTCTTCTTCAAGATTTTCAAGGGCAGACTTAATGGCAATGTCCACAGAAAGGTGGCCTTGTGCGTGGATCAGAGCAGGTCCACACTGCAAGTGAATGTGGATAAGACGAGCTACGGAGGTTTTGTGAGTGTGAAGCCTGACCAACGGTCGCTGTCGCTCAGAGTATTGGTTGATCACTCAATCGTGGAGAGTTTTGCAGAAGGAGGGAGAACTTGCATAACGTCGAGGAGTTATCCGACGGTGGCGGTTAATGAGAATGCTCGTCTCTTCGTATTTAATTATAACAAATTGCCCCTCGTCCTTCATCGCCTCTCTGCATGGCATATGAACAGTGCCATCCAAATATACGAATCTAACTGAGTCTGCACCATGATGTGAGTCTGAGTCTGAATTATGAACACTTTTTCTCCTTATTGAAATGGAAGACTACTGTACGGACTAGGAGAAGTTCCGTGCTAAAATTCACCCAACTGGAATATGACTATGTGGGTCACAATTTCTTATGAATGACAACCGCTACAAGTTTTTGGCTTCCTATCATATTTAAAAAGTGTATCTTTGTCCCAGGATTTTCAATCACTAAACCAATTCAACTTTAT

Ace file of the UniGene sp_v2.0_unigene4838 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cell wall invertase n=2 Tax=Fragaria x ananassa RepID=Q9ZP42_FRAAN	-	-	52%
FL-Next	sp=Beta-fructofuranosidase, insoluble isoenzyme CWINV1; Arabidopsis thaliana (Mouse-ear cress).	-	-	52%
Blast2go	apoplastic invertase	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-fructofuranosidase.	EC:3.2.1.26	-	0.0	66%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	66%
Blast2go	Starch and sucrose metabolism	00500	66%
Blast2go	Metabolic pathways	01100	66%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	66%
Blast2go	beta-fructofuranosidase activity	GO:0004564	Molecular Function	66%
Blast2go	cell wall	GO:0005618	Cellular Component	66%
Blast2go	response to karrikin	GO:0080167	Biological Process	66%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Glycoside hydrolase, family 32	IPR001362	-	-
Sma3	Histone H4	IPR001951	-	-
Sma3	Glycosyl hydrolases family 32, N-terminal	IPR013148	-	-
Sma3	Glycosyl hydrolase family 32, C-terminal	IPR013189	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Glycoside hydrolase, family 32, active site	IPR018053	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q43866

Fln msg: your sequence is shorter than subject: 563 - 584

Fln protein: MGGMKLFCRLSEYQKSSSPAPREAYRTAYHFQPVKHWMNDPNAPLFYKGYYHLFYQYNPKSAVWGRIVWGHAVSTDLINWRHMTGAAIYPDEWYDANGAWSGSATFLHKGGPPVILYTGSNNASEQVQVMAVPKDPSDHLLREWKKIAQNPIMVPIGINVSSFRDPTTAWLGSDQRWRVLVGSKSDENKVGMALMFRSKDFVKWVKAKHPLHSARHTGMWECPDFYPVSLDYGSHGVDTSTTGPSVKHVLKNSLDDNKVDYYTVGHYSPELDRYVPDDGSVEGHNGFRYDYGKFYASKTFFDDNKSRRILWGWINESDSVADDLNKGWASLQAIPRVVQLDPLTGRSLVQWPVPELESLREHNIRKDHVVLERESVMKVEGFSSGAAQVDVEVEFELGGDYETVEELEGMTATAQSLCSRGNNNTRGFGLMVLASDDLKERSAVFFKIFKGRLNGNVHRKVALCVDQSRSTLQVNVDKTSYGGFVSVKPDQRSLSLRVLVDHSIVESFAEGGRTCITSRSYPTVAVNENARLFVFNYNKLPLVLHRLSAWHMNSAIQIYESN*

Protein Length: 564

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTACTATAAGATTTTTGTTTGAGCCAGTAAGCGGTTCATGGCAATGGGGAAGGGTTATTCACTGCTTTGCCCATTCTTTTTTGTTTTACTCATTCGTGTTTTGCAAGCTTCTCATC_-_ATGGGTGGGATGAAGCTATTTTGTCGACTCTCAGAGTATCAAAAATCCAGTTCCCCGGCGCCCCGAGAAGCTTATAGAACAGCGTATCATTTTCAGCCCGTTAAACATTGGATGAATGATCCAAATGCGCCATTGTTCTACAAGGGCTACTATCATCTGTTCTACCAATATAATCCCAAGTCGGCTGTGTGGGGACGCATCGTGTGGGGGCATGCAGTTTCAACAGATCTCATAAATTGGAGACATATGACCGGTGCAGCTATATACCCTGATGAATGGTACGATGCCAATGGTGCCTGGTCTGGATCTGCCACTTTCCTACACAAAGGGGGCCCTCCCGTAATCTTATATACAGGATCCAACAATGCCTCGGAACAAGTTCAAGTCATGGCTGTTCCCAAGGACCCATCGGATCATTTGCTACGGGAGTGGAAGAAGATCGCGCAGAATCCCATCATGGTGCCTATTGGTATCAACGTCAGTTCTTTCAGGGATCCAACAACGGCATGGTTGGGATCAGACCAAAGATGGCGAGTCCTGGTTGGCAGCAAAAGCGATGAGAATAAGGTGGGAATGGCATTGATGTTCAGAAGCAAAGATTTCGTTAAATGGGTGAAAGCCAAACATCCGCTGCACTCGGCCAGGCATACTGGAATGTGGGAGTGCCCGGACTTCTACCCTGTGTCCCTCGACTATGGCAGCCATGGCGTTGATACCTCGACCACGGGTCCTTCTGTGAAGCACGTTCTCAAGAACAGTTTGGACGATAACAAAGTAGACTACTATACAGTGGGTCATTACTCGCCCGAGTTGGACAGGTATGTCCCCGACGATGGATCTGTGGAGGGCCACAATGGTTTCAGGTATGACTACGGTAAATTTTATGCGTCCAAGACCTTTTTTGACGATAACAAGTCCCGAAGGATTCTGTGGGGTTGGATCAACGAATCCGACAGCGTGGCTGATGATCTCAACAAAGGATGGGCTTCCCTTCAGGCAATTCCTAGGGTTGTGCAGCTTGATCCTCTTACCGGGAGAAGCCTCGTTCAGTGGCCAGTGCCAGAGCTTGAATCTTTGCGCGAGCATAATATAAGGAAGGACCACGTGGTTTTGGAAAGAGAATCGGTAATGAAGGTGGAGGGATTCAGCTCAGGAGCTGCGCAGGTGGACGTGGAGGTAGAGTTTGAGTTGGGAGGCGATTATGAAACGGTGGAGGAGTTGGAGGGAATGACAGCGACAGCTCAAAGCTTGTGCAGTCGCGGGAACAACAATACGAGGGGATTCGGGTTGATGGTGTTGGCATCTGATGATCTCAAAGAGAGGAGCGCTGTCTTCTTCAAGATTTTCAAGGGCAGACTTAATGGCAATGTCCACAGAAAGGTGGCCTTGTGCGTGGATCAGAGCAGGTCCACACTGCAAGTGAATGTGGATAAGACGAGCTACGGAGGgTTTGTGAGtGTGAAGCCTGACCAACGGTCGCTGTCGCTCAGAGTATTGGTTGATCACTCAATCGTGGAGAGTTTTGCAGAAGGAGGGAGAACTTGCATAACGTCGAGGAGTTATCCGACGGTGGCGGTTAATGAGAATGCTCGTCTCTTCGTATTTAATTATAACAAATTGCCCCTCGTCCTTCATCGCCTCTCTGCATGGCATATGAACAGTGCCATCCAAATATACGAATCTAACTGA___GTCTGCACCATGATGTGAGTCTGAGTCTGAATTATGAACACTTTTTCTCCTTATTGAAATGGAAGACTACTGTACGGACTAGGAGAAGTTCCGTGCTAAAATTCACCCAACTGGAATATGACTATGTGGGTCACAATTTCTTATGAATGACAACCGCTACAAGTTTTTGGCTTCCTATCATATTTAAAAAGTGTATCTTTGTCCCAGGATTTTCAATCACTAAACCAATTCAACTTTAT

Fln Alignment:

Contig4838___LFCRLSEYQKSSSPAPREAYRTAYHFQPVKHWMNDPNAPLFYKGYYHLFYQYNPKSAVWGRIVWGHAVSTDLINWRHMTGAAIYPDEWYDANGAWSGSATFLHKGGPPVILYTGSNNASEQVQVMAVPKDPSDHLLREWKKIAQNPIMVPI---GINVSSFRDPTTAWLGSDQRWRVLVGSKSDENKVGMALMFRSKDFVKWVKAKHPLHSARHTGMWECPDFYPVSLDYGSHGVDTSTTGPS---VKHVLKNSLDDNKVDYYTVGHYSPELDRYVPDDGSVEGHNGFRYDYGKFYASKTFFDDNKSRRILWGWINESDSVADDLNKGWASLQAIPRVVQLDPLTGRSLVQWPVPELESLREHNIRK-DHVVLERESVMKVEGFSSGAAQVDVEVEFELGGDYETVEELEGMTATAQSLCSRGNNNTRG----FGLMVLASDDLKERSAVFFKIFKGRLNGNVHRKVALCVDQSRSTLQVNVDKTSYGGFVSVKPDQRSLSLRVLVDHSIVESFAEGGRTCITSRSYPTVAVNENARLFVFNYNKLPLVLHRLSAWHMNSA
Q43866______________VYKRLTQSTNTKSPSVNQPYRTGFHFQPPKNWMNDPNGPMIYKGIYHLFYQWNPKGAVWGNIVWAHSTSTDLINWDPHP-PAIFPSAPFDINGCWSGSATIL-PNGKPVILYTGIDPKNQQVQNIAEPKNLSDPYLREWKKSPLNPLMAPDAVNGINASSFRDPTTAWLGQDKKWRVIIGSKI--HRRGLAITYTSKDFLKWEKSPEPLHYDDGSGMWECPDFFPVTR-FGSNGVETSSFGEPNEILKHVLKISLDDTKHDYYTIGTYDRVKDKFVPDNGFKMDGTAPRYDYGKYYASKTFFDSAKNRRILWGWTNESSSVEDDVEKGWSGIQTIPRKIWLD-RSGKQLIQWPVREVERLRTKQVKNLRNKVLKSGSRLEVYGVT--AAQADVEVLFKV-RDLEKADVIEPSWTDPQLICSKMNVSVKSGLGPFGLMVLASKNLEEYTSVYFRIFKARQNSNKY-VVLMCSDQSRSSLKEDNDKTTYGAFVDINPHQ-PLSLRALIDHSVVESFGGKGRACITSRVYPKLAIGKSSHLFAFNYGYQSVDVLNLNAWSMNSA

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1315		25		75	0.996473
1454		50		50	1.0
1529		66		33	0.997452
1662	80		20		0.995493
1680	40		60		1.0
1740	25	75			0.996473
1769	80		20		0.995493
1827		25		75	0.996473
1828		25		75	0.996473
1829		25		75	0.996473
1831	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain