SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4795

Length: 1135 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene4795 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thylakoid lumenal 29.8 kDa protein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SJN0_RICCO	-	-	76%
FL-Next	sp=PsbP domain-containing protein 6, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	66%
Blast2go	protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	photosynthesis	GO:0015979	Biological Process	81%
Blast2go	protein binding	GO:0005515	Molecular Function	81%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	81%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	81%
Blast2go	extrinsic to membrane	GO:0019898	Cellular Component	81%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	81%
Blast2go	oxygen evolving complex	GO:0009654	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem II PsbP, oxygen evolving complex	IPR002683	-	0.0	-
Sma3	Mog1/PsbP, alpha/beta/alpha sandwich	IPR016123	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LXX5

Fln msg:

Fln protein: MQTATTASALCKCSSIPPSYTYNTIGPPIHLKKKTKERHAQKRLFHGARCQVLHHHQQHGQSFAPAMSRRWVCMGSGAAAALWMLLIGTEESQAKDIQVGSYLPPAPSEAGFVQFKATNKDTPALRAGNVEPYQFILPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDEKQGTVQVIASPLIRLTNKPNAQIEEIGSPEKLIASLGPFVTGNSYDPDELVESNVQKYDDQTYYRYALETPYALTGTHNLAKATAKGNTVILFVVSANDKQWPKSENILRTMVDSFQI*

Protein Length: 291

Fln nts: TATTGGGTATTGTAAAAGTCCAACGATAGAATTGTGGGTAAGGAGAGATTGGGAGG_-_ATGCAGACAGCCACGACAGCTTCTGCTCTGTGCAAATGTTCATCCATTCCACCTTCATACACCTACAATACTATTGGGCCACCCATACATTTGAAGAAAAAGACGAAGGAGAGGCATGCACAGAAGAGGTTATTCCATGGAGCGCGCTGCCAAGTGCTGCATCATCATCAACAACATGGACAATCATTTGCCCCCGCAATGAGCAGAAGGTGGGTGTGCATGGGAAGTGGTGCAGCAGCTGCTCTTTGGATGTTATTAATTGGAACAGAGGAATCGCAAGCTAAGGACATACAGGTTGGCTCATACCTCCCCCCTGCACCATCCGAAGCAGGCTTTGTTCAATTCAAGGCTACCAACAAAGACACCCCTGCTCTGCGCGCAGGCAATGTGGAACCATATCAGTTTATTCTTCCTCCTACCTGGAAACAGGTCCGAGTTGCTAACATACTATCGGGTAACTATTGTCAGCCTAAGTGTGCTGAGCCTTGGGTGGAGGTAAAGTTTGAAGATGAAAAGCAAGGAACTGTGCAGGTAATTGCATCTCCTTTGATCCGCCTTACAAACAAACCAAATGCTCAAATTGAGGAAATTGGAAGTCCAGAGAAGTTGATTGCTTCATTGGGTCCCTTCGTAACTGGGAACAGCTATGACCCGGATGAGCTTGTTGAAAGTAATGTGCAAAAGTATGATGACCAAACGTACTACAGGTATGCGTTGGAAACCCCATATGCTTTGACTGGCACACACAATCTTGCAAAAGCTACAGCAAAAGGAAATACAGTTATATTATTTGTGGTTAGTGCCAATGATAAGCAGTGGCCAAAGTCTGAAAACATACTGAGAACTATGGTAGATTCCTTCCAAATCTAG___TAATTCATTTATTTTATTTCCTAGTAAAATGAATCAGCAAAGCATGTATGCAATCATTTACATTTTTTCAAATAGTAAGCAATACTGTAAGCCTTGTTCAGTTCTTTCCATTAAATTTCCTCCGTGTTCAGAAGTTGTGAAATGCATCCATGCCGGAAGGTAAAGTGAGCCTGCTTTAATTAATTTATATTGTCTTACAACAGAATGAG

Fln Alignment:

Contig4795___RRWVCMGSGAAAALWMLLIGTEESQAKDIQVGSYLPPAPSEAGFVQFKATNKDTPALRAGNVEPYQFILPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDEKQGTVQVIASPLIRLTNKPNAQIEEIGSPEKLIASLGPFVTGNSYDPDELVESNVQKYDDQTYYRYALETPYALTGTHNLAKATAKGNTVILFVVSANDKQWPKSENILRTMVDS
Q9LXX5______________RRELLLKSAVAIPAILQLKEAPISAAREVEVGSYLPLSPSDPSFVLFKAKPSDTPALRAGNVQPYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNKPNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVVLFVVSATEKQWQSSQKTLEAILDS

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
747	90	10			0.90298
749			90	10	0.90298
750		90		10	0.90298
985	12			87	0.992554
986	12	87			0.992554
1103	75	25			0.996473
1104		75		25	0.996473
1105	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain