SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4774

Length: 1654 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4774

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative polyamine oxidase precursor [Oryza sativa Japonica Group] dbj\|BAD25971.1\| putative polyamine oxidase precursor [Oryza sativa Japonica Group]	-	-	60%
FL-Next	sp=Polyamine oxidase; Zea mays (Maize).	-	-	47%
Blast2go	polyamine oxidase	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	0.0	75%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Tobamoviral movement protein	IPR001022	-	-
Sma3	Flavin amine oxidase	IPR001613	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Amine oxidase	IPR002937	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O64411

Fln msg: Separated hits, possible frame ERROR between 364 and 378,

Fln protein: DNGMKDFVILEATDRIGGRMHKESFAGHTVEMGANWVEGVGGKNMNPIWSLAQKCKLRTSYSDYSNISNNIYHQNGGLLPQSVVARPYALATASSEYSSKLSKSFQQNGEEDISILTSQRxxxxxxPMTPLEMAIDYYFYDFEVAEPPRVTSLKNVEPIATFEYYGDDEYFVADRRGYEHIIHKLVEEFLQCHNGSISDEHLKFNQVVREIIYTDKGVKVLTEDGSVYTANNAIVSVSVGVLQSKLIKFKPDLPLWKLLAIYRWDMVDYCKIFMKFPFKFWPTGPGTEFFLYAHEKRGYYSFWQHLENAYPGGNILMVTVTDDEARRIEQQPDEDVKAEIMIVLRKMFGNNVPEMEAILVPRWGKNRFFRGTYSNWPIGVSTRDFNNVKAPVGPIYFTGEHTSEDFNGYVHGAYLAGIDTAHMLLDCINKGGNCDSKSHGETPAKNESSCDAEIQQRVRKVGSSRRRSFSVKAGDQKDISRTDFY*

Protein Length: 487

Fln nts: GGACAATGGAATGAAGGACTTTGTAATACTAGAAGCTACAGATAGAATTGGGGGGAGAATGCACAAAGAATCGTTTGCAGGGCATACAGTAGAGATGGGTGCCAACTGGGTGGAGGGCGTTGGAGGAAAAAACATGAACCCCATATGGTCTCTGGCCCAGAAATGCAAGCTTCGGACATCTTATTCTGATTACAGCAATATCAGCAACAATATCTATCATCAAAACGGAGGTCTTCTGCCTCAGTCTGTGGTTGCACGACCATATGCTCTGGCAACAGCATCATCTGAGTACAGTTCAAAGCTCTCCAAATCATTTCAGCAGAATGGAGAGGAAGACATATCTATCTTAACGTCACAAAGGATxxxxxxxxxxxxxxxGCCAATGACACCCTTGGAGATGGCGATTGATTACTACTTCTATGACTTCGAAGTCGCAGAACCTCCACGAGTGACGAGCTTAAAGAATGTAGAACCCATTGCAACGTTCGAATACTATGGGGATGATGAATATTTCGTAGCTGACAGGCGAGGATATGAGCACATTATTCACAAGCTAGTTGAGGAATTCCTTCAATGTCATAATGGATCTATATCAGATGAACATCTCAAATTCAACCAGGTTGTGAGAGAAATTATATATACAGACAAAGGTGTCAAGGTTTTGACCGAAGACGGTTCAGTGTACACAGCAAATAATGCCATTGTCTCTGTCAGCGTGGGAGTTCTTCAATCAAAACTCATCAAGTTTAAACCTGATCTGCCTCTATGGAAATTGCTGGCAATATACAGATGGGATATGGTTGACTACTGCAAGATCTTTATGAAGTTCCCTTTCAAATTCTGGCCCACTGGACCCGGCACCGAGTTCTTCTTATATGCCCATGAAAAGAGAGGTTATTACAGTTTCTGGCAGCATTTGGAGAATGCATACCCTGGCGGCAACATTCTGATGGTAACTGTCACGGACGACGAAGCCCGGCGTATAGAACAACAGCCTGACGAGGATGTCAAAGCAGAAATAATGATTGTTCTCAGGAAAATGTTCGGCAACAACGTTCCAGAGATGGAGGCCATACTTGTTCCAAGGTGGGGAAAAAATCGATTCTTCAGGGGTACTTATTCCAACTGGCCAATAGGCGTTTCCACCAGGGACTTCAACAACGTTAAGGCACCCGTTGGACCTATCTACTTCACTGGAGAGCATACAAGTGAGGATTTTAATGGTTACGTCCATGGTGCTTATCTTGCAGGTATAGACACTGCCCACATGCTGTTGGACTGCATTAATAAGGGAGGTAATTGCGACAGCAAATCTCATGGAGAAACTCCAGCTAAGAACGAGTCTTCCTGTGATGCAGAGATTCAGCAGAGGGTGAGGAAGGTCGGAAGTTCTAGACGACGATCTTTTTCAGTTAAAGCTGGTGACCAGAAAGATATAAGTAGAACTGATTTTTATTGATGTTTTGATTGCAACCGTATAGCAGAAATAAGTGGGGAATATAATGGTATATCAATAATGTATTCTATTGAAGTTCGCTTAAACCTCAGCATCCTATTTATATTTGTTGAGTAACGCTGGACCAGGGGTTGAAGTATTAATGTTTCCTTTGCAAAATGGTTATGTTTAATATGATATGTAGAAAAACTGTTATTGTT

Fln Alignment:

Contig4774___GMKDFVILEATDRIGGRMHKESFAGHTVEMGANWVEGVGGKNMNPIWSLAQK-CKLRTXXXXXXXXXXXXXHQNGGLLPQSVVARPYALATAXXXXXXXXXXXFQQNGEEDISILTSQRIxxxxxPMTPLEMAIDYYFYDFEVAEPPRVTSLKNVEPIATFEYYGDDEYFVADRRGYEHIIHKLVEEFLQCHN--GSISDEHLKFNQVVREIIYTDKGVKVLTEDGSVYTANNAIVSVSVGVLQSKLIKFKPDLPLWKLLAIYRWDMVDYCKIFMKFPFKFWPTGPGTEFFLYAHEKRGYYSFWQHLENAYPGGNILMVTVTDDEARRIEQQPDEDVKAEIMIVLRKMF-GNNVPEMEAILVPRWGKNRFFRGTYSNWPIGVSTRDFNNVKAPVGPIYFTGEHTSEDFNGYVHGAYLAGIDTAHMLLDCINK
O64411______________GITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSILAMQRLxxxxxPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1493			14	85	0.993533
1494			71	14	0.984337

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain