SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4724

Length: 702 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene4724 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	79%
Blast2go	udp-galactose:fucoside alpha-3-galactosyltransferase	-	-	1.17247e-40	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	rhamnogalacturonan II biosynthetic process	GO:0010306	Biological Process	1.17247e-40	87%
Blast2go	microtubule-based movement	GO:0007018	Biological Process	1.17247e-40	87%
Blast2go	microtubule motor activity	GO:0003777	Molecular Function	1.17247e-40	87%
Blast2go	UDP-xylosyltransferase activity	GO:0035252	Molecular Function	1.17247e-40	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	1.17247e-40	87%
Blast2go	microtubule	GO:0005874	Cellular Component	1.17247e-40	87%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	1.17247e-40	87%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	1.17247e-40	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Reticulon	IPR003388	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
413	33	66			0.997452
488	90			10	0.90298
491		90	10		0.90298
492		90		10	0.90298
494		10		90	0.90298
496	90		10		0.90298
497		10		90	0.90298
500	10			90	0.90298
502	90		10		0.90298
503	90			10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain