SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4705

Length: 1050 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene4705

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	High-affinity nitrate transport system component n=1 Tax=Cucumis sativus RepID=C8CHG8_CUCSA	-	-	48%
FL-Next	sp=High-affinity nitrate transporter 3.1; Arabidopsis thaliana (Mouse-ear cress).	-	-	51%
Blast2go	nitrate transmembrane transporter	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	68%
Blast2go	nitrate transport	GO:0015706	Biological Process	68%
Blast2go	response to nitrate	GO:0010167	Biological Process	68%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	68%
Blast2go	nitrate transmembrane transporter activity	GO:0015112	Molecular Function	68%
Blast2go	plasma membrane	GO:0005886	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	Fibronectin, type III	IPR003961	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Transporter, high affinity nitrate, Nar2	IPR016605	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
445		14		85	0.993533
523	75		25		0.996473
580		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain