SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4694

Length: 581 nt

Origin of reads: Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene4694 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RL32_RICCO	-	-	63%
FL-Next	tr=ATP-dependent RNA helicase, putative; Ricinus communis (Castor bean).	-	-	70%
Blast2go	atp-dependent rna	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	double-stranded RNA binding	GO:0003725	Molecular Function	77%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Fructose-bisphosphate aldolase, class-I	IPR000741	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	ThiJ/PfpI	IPR002818	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	TIP41-like protein	IPR007303	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
116	33	66			0.997452
131			33	66	0.997452
140			33	66	0.997452
267	33		66		1.0
277	83	16			0.994512
280			83	16	0.994512
557		16		83	0.994512
558		20		80	0.995493
559		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain