SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4677

Length: 810 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene4677 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, Ty1-copia subclass n=9 Tax=Oryza sativa RepID=Q109L4_ORYSJ	-	-	5.0e-15	44%
FL-Next	sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco).	-	-	0.0	44%
Blast2go	copia partial	-	-	1.08822e-18	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	1.08822e-18	67%

Source	KEGGs	Term	e value	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	1.08822e-18	67%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	1.08822e-18	67%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	1.08822e-18	67%
Blast2go	Glycosaminoglycan degradation	00531	1.08822e-18	67%
Blast2go	Metabolic pathways	01100	1.08822e-18	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	1.08822e-18	67%
Blast2go	DNA recombination	GO:0006310	Biological Process	1.08822e-18	67%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	1.08822e-18	67%
Blast2go	DNA binding	GO:0003677	Molecular Function	1.08822e-18	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	NB-ARC	IPR002182	-	0.0	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
196	66	33			0.997452
197	66		33		0.997452
200			33	66	0.997452
201	66			33	0.997452
202	66		33		0.997452
205	66	33			0.997452
206			66	33	0.997452
207	66			33	0.997452
211			66	33	0.997452
212		66	33		0.997452
213	66			33	0.997452
218	66			33	0.997452
220	75	25			0.996473
222	75			25	0.996473
223		75		25	0.996473
226	75			25	0.996473
227		75	25		0.996473
229		25	75		0.996473
231	75			25	0.996473
232		75		25	0.996473
233	75		25		0.996473
234		75	25		0.996473
237	75			25	0.996473
239	75			25	0.996473
258	83		16		0.994512
261	83		16		0.994512
262			83	16	0.994512
263	83		16		0.994512
269	83			16	0.994512
272	83		16		0.994512
275			16	83	0.994512
276			83	16	0.994512
278	16			83	0.994512
279		16		83	0.994512
334			16	83	0.994512
337		66	33		1.0
338	83			16	0.994512
340		16	83		0.994512
341	83	16			0.994512
342			83	16	0.994512
343	83			16	0.994512
344	83		16		0.994512
347		83	16		0.994512
350	16	83			0.994512
572		50		50	1.0
575	75			25	0.996473
576	25			75	0.996473
578			25	75	0.996473
579		25		75	0.996473
581		33		66	0.997452
589		33		66	0.997452
632		33	66		0.997452
660	66		33		0.997452
664			66	33	0.997452
669	66			33	0.997452
676	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain