SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene4666

Length: 2261 nt

Origin of reads: Inia v1 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene4666
CGTCGTGACCTTGGCTGTCACTCATCTCTGTGTGGTTGACATGGAAGGACTTGACTGTTACTGTCACCAATGCTAAAGGAGAGCCGCATAGAGTTCTCCAAGGCTTGACGGGGTATGCTGAGCCTGGCTTTATTATGGCCATCATGGGGCCTTCTGGGTCTGGGAAATCTACTCTCCTTGACAGTTTAGCAGGGAGGTTGTCCAAGAATAGTTTTCAGACAGGAGAAATCCTTGTCAATGGCAGAAGGCGGACGCTTTCGTATGGAACTGTCGCTTATGTTACTCAAGAAGATACCCTCATCGGCACTCTAACGGTTCGAGAGTCGATCCACTATTCTGCCCATATCAGGCTTCCGGACAAAATGCCTCGAGAGGAGAAGATGGCCATTGTTGAGAGCACCATTATGGAAATGGGTCTTCAGGATTGTGCAGACACTCCGATTGGAAATTGGCATCTGCGAGGATTGAGTGGTGGAGAGAAGAGGCGCGTTAGCATTGCTCTGGAGATTCTCATGCGCCCTCGTTTGCTATTTCTGGATGAGCCAACCAGTGGTCTTGATAGTGCTTCGGCGTTCTTCGTCACACAAACTCTTAGAAATCTAGCCCGCGATGGAAGGACTGTGATTGCTTCCATTCACCAGCCCAGCAGTGAAGTGTTTACCTTGTTTGATTACCTGTATCTCCTGTCTGGAGGGCAGACTGTCTACTTTGGGGAAACAAGATCTGCCCACGAGTTCTTTGAACAAGCCGGTTTCCCATGCCCTCCACTGAGAAATCCTTCAGATCATTTCATTCGTTGCATTAATTCGGATTTCGACAGGGTCAAAGCTACTCTGAAGGGATCGTACAGGCTCAGAGCCACGGAATTGAATGACCCTCTTGACAAGATAAGCACAGGCCAAGCCATAAGAATTTTGATGGATCATTATAATTCCTCTGAGTATGCAATGCTGACAGCTGCGAGGGTTCATGAAATATCACAAATTAAAGGAACGGTCCTAGAATCGAACGGAAGTCAAGCTAGTTTCTTGATGCAGTGTTATACTTTGACAAAACGATCTTTCGTTAATATGACTAGAGATGTTGGATACTACTGGTTACGAGTTGTAATATACACATTCGTGACAATCTGCATTGGAACCATATACTACAACGTTGGAACTGATTATACTGCTATTTTGGCCAGAGGTTCCTGTGCGTCCTATGTTTCTGGATTCATGACATTCATGTCCATTGGAGGATTCCCTTCTTTTGTGGAGGATATGAAGGTTTTTCAGCGTGAAAGGTTCAATGGACACTACGGAGTGCTTGCTTTTGTCATTGCCAACACGCTGTCTTCAATGCCATATCTGGCACTTGTTGCAACAATATCCGGGACAATCACCTACTACATGGTGAAACTGCATCCTGGATTTACTCATTATTTATATTTTGTGCTGAACCTCTTCTCTTGCATGGCCGTTGTTGAGAGCTTGATGATGACAGTGGCCACCTTGGTGCCCAATTTCTTGATGGGAATCATTACAGGAGCAGGAATCCTGGGAATATACATGCTGGTTGCTGGATTTTTTCGTTTTCTGAAAGATCTCCCCAAACCAGTTTGGCGCTATCCCATGTCATATATTAGCTCCAACTCTTGGGGCATTGCAGGGCCAATACAAGAACGACTTGCTTGGAATATATTTCAAACCGCAGATTGAAGGAATGCCCAAAATCAGTGGTGAATATATCTTAAAAAATGTGTTTGAAATCAATACAAAGCGGTCCAAATGGTTGGACTTGGTCATCATATTCTCAATGATTTTTATTTACCGCATGATCTTCTTTCTTATGATCAAATACAACGAGAAGATTGGCCCTTCCTTGCGAGCACGCTATGCAAAGCACAAGATGAGGTCATCGGGAAAGCAGGTCTCCATGAACACCGTAAGGCCTACTCCACCTGGCCATTCTGGTGAAGCAGGATCCTCTCCATCTTGAACCAAAAACACAACTTTGGTTGTGTGCAAGGACTTTCCTACTGAACAATGGTCGACTTTATCTACCCTATAAAGCCATGATTGGCTTTTTTGTATGTAGAATATGGATTCACTGATGTCCATGCAAGGACAGCCATTTCTGATTTCGAAAACCCATGTCTGCATGCATGTATAGAACTACAAAGTAAACAGCAATCTATGTTTGAACTTTGCCTTAGACTATTCATGTAATCTTCTTAGAAGTAAGAAAGCCAGAAGTCCGGGACTTGTAAGTCAGATTGC

Ace file of the UniGene sp_v2.0_unigene4666

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter G family member 11 n=3 Tax=Arabidopsis RepID=AB11G_ARATH	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	atp-binding cassette transporter	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	ATP catabolic process	GO:0006200	Biological Process	83%
Blast2go	cutin transport	GO:0080051	Biological Process	83%
Blast2go	organic phosphonate transmembrane-transporting ATPase activity	GO:0015416	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	fatty acid transporter activity	GO:0015245	Molecular Function	83%
Blast2go	external side of plasma membrane	GO:0009897	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	Sodium:dicarboxylate symporter, conserved site	IPR018107	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL31

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 69 aas, putative chimeric sequence, your sequence is shorter than subject: 566 - 676

Fln protein: S*PWLSLISVWLTWKDLTVTVTNAKGEPHRVLQGLTGYAEPGFIMAIMGPSGSGKSTLLDSLAGRLSKNSFQTGEILVNGRRRTLSYGTVAYVTQEDTLIGTLTVRESIHYSAHIRLPDKMPREEKMAIVESTIMEMGLQDCADTPIGNWHLRGLSGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRNLARDGRTVIASIHQPSSEVFTLFDYLYLLSGGQTVYFGETRSAHEFFEQAGFPCPPLRNPSDHFIRCINSDFDRVKATLKGSYRLRATELNDPLDKISTGQAIRILMDHYNSSEYAMLTAARVHEISQIKGTVLESNGSQASFLMQCYTLTKRSFVNMTRDVGYYWLRVVIYTFVTICIGTIYYNVGTDYTAILARGSCASYVSGFMTFMSIGGFPSFVEDMKVFQRERFNGHYGVLAFVIANTLSSMPYLALVATISGTITYYMVKLHPGFTHYLYFVLNLFSCMAVVESLMMTVATLVPNFLMGIITGAGILGIYMLVAGFFRFLKDLPKPVWRYPMSYISSNSWGIAGPIQERLAWNIFQTAD*

Protein Length: 567

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCTGTGTGGTTGACATGGAAGGACTTGACTGTTACTGTCACCAATGCTAAAGGAGAGCCGCATAGAGTTCTCCAAGGCTTGACGGGGTATGCTGAGCCTGGCTTTATTATGGCCATCATGGGGCCTTCTGGGTCTGGGAAATCTACTCTCCTTGACAGTTTAGCAGGGAGGTTGTCCAAGAATAGTTTTCAGACAGGAGAAATCCTTGTCAATGGCAGAAGGCGGACGCTTTCGTATGGAACTGTCGCTTATGTTACTCAAGAAGATACCCTCATCGGCACTCTAACGGTTCGAGAGTCGATCCACTATTCTGCCCATATCAGGCTTCCGGACAAAATGCCTCGAGAGGAGAAGATGGCCATTGTTGAGAGCACCATTATGGAAATGGGTCTTCAGGATTGTGCAGACACTCCGATTGGAAATTGGCATCTGCGAGGATTGAGTGGTGGAGAGAAGAGGCGCGTTAGCATTGCTCTGGAGATTCTCATGCGCCCTCGTTTGCTATTTCTGGATGAGCCAACCAGTGGTCTTGATAGTGCTTCGGCGTTCTTCGTCACACAAACTCTTAGAAATCTAGCCCGCGATGGAAGGACTGTGATTGCTTCCATTCACCAGCCCAGCAGTGAAGTGTTTACCTTGTTTGATTACCTGTATCTCCTGTCTGGAGGGCAGACTGTCTACTTTGGGGAAACAAGATCTGCCCACGAGTTCTTTGAACAAGCCGGTTTCCCATGCCCTCCACTGAGAAATCCTTCAGATCATTTCATTCGTTGCATTAATTCGGATTTCGACAGGGTCAAAGCTACTCTGAAGGGATCGTACAGGCTCAGAGCCACGGAATTGAATGACCCTCTTGACAAGATAAGCACAGGCCAAGCCATAAGAATTTTGATGGATCATTATAATTCCTCTGAGTATGCAATGCTGACAGCTGCGAGGGTTCATGAAATATCACAAATTAAAGGAACGGTCCTAGAATCGAACGGAAGTCAAGCTAGTTTCTTGATGCAGTGTTATACTTTGACAAAACGATCTTTCGTTAATATGACTAGAGATGTTGGATACTACTGGTTACGAGTTGTAATATACACATTCGTGACAATCTGCATTGGAACCATATACTACAACGTTGGAACTGATTATACTGCTATTTTGGCCAGAGGTTCCTGTGCGTCCTATGTTTCTGGATTCATGACATTCATGTCCATTGGAGGATTCCCTTCTTTTGTGGAGGATATGAAGGTTTTTCAGCGTGAAAGGTTCAATGGACACTACGGAGTGCTTGCTTTTGTCATTGCCAACACGCTGTCTTCAATGCCATATCTGGCACTTGTTGCAACAATATCCGGGACAATCACCTACTACATGGTGAAACTGCATCCTGGATTTACTCATTATTTATATTTTGTGCTGAACCTCTTCTCTTGCATGGCCGTTGTTGAGAGCTTGATGATGACAGTGGCCACCTTGGTGCCCAATTTCTTGATGGGAATCATTACAGGAGCAGGAATCCTGGGAATATACATGCTGGTTGCTGGATTTTTTCGTTTTCTGAAAGATCTCCCCAAACCAGTTTGGCGCTATCCCATGTCATATATTAGCTCCAACTCTTGGGGCATTGCAGGGCCAATACAAGAACGACTTGCTTGGAATATATTTCAAACCGCAGATTGA___AGGAATGCCCAAAATCAGTGGTGAATATATCTTAAAAAATGTGTTTGAAATCAATACAAAGCGGTCCAAATGGTTGGACTTGGTCATCATATTCTCAATGATTTTTATTTACCGCATGATCTTCTTTCTTATGATCAAATACAACGAGAAGATTGGCCCTTCCTTGCGAGCACGCTATGCAAAGCACAAGATGAGGTCATCGGGAAAGCAGGTCTCCATGAACACCGTAAGGCCTACTCCACCTGGCCATTCTGGTGAAGCAGGATCCTCTCCATCTTGAACCAAAAACACAACTTTGGTTGTGTGCAAGGACTTTCCTACTGAACAATGGTCGACTTTATCTACCCTATAAAGCCATGATTGGCTTTTTTGTATGTAGAATATGGATTCACTGATGTCCATGCAAGGACAGCCATTTCTGATTTCGAAAACCCATGTCTGCATGCATGTATAGAACTACAAAGTAAACAGCAATCTATGTTTGAACTTTGCCTTAGACTATTCATGTAATCTTCTTAGAAGTAAGAAAGCCAGAAGTCCGGGACTTGTAAGTCAGATTGC

Fln Alignment:

Contig4666___LISVWLTWKDLTVTVTNAKGEPHR-VLQGLTGYAEPGFIMAIMGPSGSGKSTLLDSLAGRL--SKNSFQTGEILVNGRRRTLSYGTVAYVTQEDTLIGTLTVRESIHYSAHIRLPDKMPREEKMAIVESTIMEMGLQDCADTPIGNWHLRGLSGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRNLARDGRTVIASIHQPSSEVFTLFDYLYLLSGGQTVYFGETRSAH-EFFEQAGFPCPPLRNPSDHFIRCINSDFDRVKATLKGSYRLRATELNDPLDKISTGQAIRILMDHYNSSEYAMLTAARVHEISQIKGTVLESNGSQASFLMQCYTLTKRSFVNMTRDVGYYWLRVVIYTFVTICIGTIYYNVGTDYTAILARGSCASYVSGFMTFM-----SIGGFPSFVEDMKVFQRERFNGHYGVLAFVIANTLSSMPYLALVATISGTITYYMVKLHPGFTHYLYFVLNLFSCMAVVES-----LMMTVATLVPNFLMGIITGAGILGIYMLVAGFF
B8LL31______________IVPVTLQWRNITCTLSDKARKLTRFLLTNASGEAKAGRLLAIMGPSGSGKTTLLNVLAGQLAASPRLHLTGQLYVNGSPFYMASPKIAFVRQEDLFFSQLTVRETLSLAAELQLSKLSTPKDREKYVNDLIFRLGLVSCADCVVGDAKVRGISGGEKKRLSVACELIASPSVIFADEPTTGLDAFQAEMVMETLRQLAQEGHTVVCSIHQPRGSIYTKFDDLILLSEGAVVYAGPAKEEPLLYFAEHGFICQEHVNPAEFFADLISIDYSSSE-----SEHLSRKRIDDMIEAFANKFSTMPDLKHGNLG-FGMET-DKVSMKSRRKSVTPGKGGWWKQFRL----LLKRAWMQATRDGPTNKVRARMSVASALIFGSIFWRMGLSQTSIQDRMGLLQ-VAAINTAMAALTKTVSVFP---KERAIIDRERAKGSYALGPYLFAKLLAEIPVGAAFPLVFGIILYPMARLHPSLLRF-----GTFSSIVTVESFAASAMGLTVGAMVPTTEAAMALGPSLMTVFIVFGGYY

SNPs (tot: 70)

Position	A %	C %	G %	T %	Probability
540		12		87	0.992554
542	87			12	0.992554
543		12	87		0.992554
544		87	12		0.992554
545		87		12	0.992554
546	87		12		0.992554
551			85	14	0.993533
555		14		85	0.993533
557			14	85	0.993533
559		14	85		0.993533
562	85	14			0.993533
563	14		85		0.993533
570			85	14	0.993533
672		16		83	0.994512
1005	83		16		0.994512
1248			14	85	0.993533
1252	14			85	0.993533
1253		14		85	0.993533
1254		14		85	0.993533
1255			85	14	0.993533
1257	14		85		0.993533
1258		14	85		0.993533
1259	85	14			0.993533
1260			71	28	1.0
1261			85	14	0.993533
1262	83			16	0.994512
1263		16		83	0.994512
1265		20		80	0.995493
1266			80	20	0.995493
1267	80	20			0.995493
1301	80		20		0.995493
1316		25		75	1.0
1317			25	75	1.0
1320	25			75	1.0
1322	75	25			1.0
1328		75		25	1.0
1329	75		25		1.0
1330	75			25	1.0
1334			75	25	1.0
1337	25		75		1.0
1350		27		72	1.0
1351	72		27		1.0
1357	27		72		1.0
1365		27		72	1.0
1372	72			27	1.0
1414		15		84	0.999986
1416		84		15	0.999986
1420	84	15			0.999986
1423		16		83	0.999991
1429		18		81	0.999994
1531		18		81	0.999994
1537	83	16			0.999991
1540	83		16		0.999991
1541			83	16	0.999991
1546		83	16		0.999991
1550			83	16	0.999991
1551		16	83		0.999991
1553	83	16			0.999991
1769		88		11	0.923564
1824	87	12			0.992554
1826			87	12	0.992554
1827	75	12	12		0.975346
1828			12	87	0.992554
1961			9	90	0.999842
1963		9	90		0.999842
1966	90			9	0.999842
1967	90	9			0.999842
1968	9		90		0.999842
1971			90	9	0.999842
1972		9	90		0.999842

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain